Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   R9P_RS22385 Genome accession   NZ_AP024582
Coordinates   4712333..4713325 (-) Length   330 a.a.
NCBI ID   WP_073520201.1    Uniprot ID   -
Organism   Escherichia coli strain Ec387     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4707333..4718325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9P_RS22375 (R9P_42850) yieP 4710225..4710917 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  R9P_RS22380 (R9P_42860) mdtD 4710940..4712367 (+) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  R9P_RS22385 (R9P_42870) cytR 4712333..4713325 (-) 993 WP_073520201.1 ribose operon transcriptional repressor RbsR Regulator
  R9P_RS22390 (R9P_42880) rbsK 4713329..4714258 (-) 930 WP_001300603.1 ribokinase -
  R9P_RS22395 (R9P_42890) rbsB 4714384..4715274 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  R9P_RS22400 (R9P_42900) rbsC 4715299..4716264 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  R9P_RS22405 (R9P_42910) rbsA 4716269..4717774 (-) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  R9P_RS22410 (R9P_42920) rbsD 4717782..4718201 (-) 420 WP_001364631.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36596.93 Da        Isoelectric Point: 5.2141

>NTDB_id=73440 R9P_RS22385 WP_073520201.1 4712333..4713325(-) (cytR) [Escherichia coli strain Ec387]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYLAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=73440 R9P_RS22385 WP_073520201.1 4712333..4713325(-) (cytR) [Escherichia coli strain Ec387]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCTGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment