Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P4B24_RS09935 Genome accession   NZ_CP120708
Coordinates   2120691..2121020 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY7723     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2115691..2126020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B24_RS09920 (P4B24_09925) - 2116306..2117268 (+) 963 WP_023108545.1 SDR family oxidoreductase -
  P4B24_RS09925 (P4B24_09930) - 2117268..2118305 (+) 1038 WP_031637767.1 glycosyltransferase family 4 protein -
  P4B24_RS09930 (P4B24_09935) - 2118503..2120500 (+) 1998 WP_042172367.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P4B24_RS09935 (P4B24_09940) comEA/comE1 2120691..2121020 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  P4B24_RS09945 (P4B24_09950) - 2121237..2122433 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  P4B24_RS09950 (P4B24_09955) uvrB 2122621..2124633 (+) 2013 WP_023108541.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=734375 P4B24_RS09935 WP_003091430.1 2120691..2121020(+) (comEA/comE1) [Pseudomonas aeruginosa strain NY7723]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=734375 P4B24_RS09935 WP_003091430.1 2120691..2121020(+) (comEA/comE1) [Pseudomonas aeruginosa strain NY7723]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385