Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDM80_RS02330 Genome accession   NZ_CP106749
Coordinates   452258..452869 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447258..457869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS02305 (NDM80_02305) - 447719..448300 (-) 582 WP_003690895.1 superoxide dismutase -
  NDM80_RS02310 (NDM80_02310) dnaB 448464..449870 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDM80_RS02315 (NDM80_02315) pilH 450024..450689 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDM80_RS02320 (NDM80_02320) pilV 450721..451332 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDM80_RS02325 (NDM80_02325) pilJ 451329..452279 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NDM80_RS02330 (NDM80_02330) pilK 452258..452869 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDM80_RS02335 (NDM80_02335) pilL 452871..453344 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDM80_RS02340 (NDM80_02340) - 453414..453722 (-) 309 WP_025456177.1 AzlD family protein -
  NDM80_RS02345 (NDM80_02345) - 453719..454429 (-) 711 Protein_460 AzlC family ABC transporter permease -
  NDM80_RS02350 (NDM80_02350) dut 454595..455047 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDM80_RS02355 (NDM80_02355) dapC 455123..456310 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDM80_RS02360 (NDM80_02360) yaaA 456466..457245 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=734375 NDM80_RS02330 WP_033911077.1 452258..452869(+) (pilK) [Neisseria gonorrhoeae strain 10723]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=734375 NDM80_RS02330 WP_033911077.1 452258..452869(+) (pilK) [Neisseria gonorrhoeae strain 10723]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956