Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDM80_RS02315 Genome accession   NZ_CP106749
Coordinates   450024..450689 (+) Length   221 a.a.
NCBI ID   WP_003699624.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445024..455689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS02290 (NDM80_02290) cysT 445311..446138 (-) 828 WP_003699619.1 sulfate ABC transporter permease subunit CysT -
  NDM80_RS02295 (NDM80_02295) - 446319..446651 (+) 333 WP_003687908.1 hypothetical protein -
  NDM80_RS02300 (NDM80_02300) - 446978..447487 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDM80_RS02305 (NDM80_02305) - 447719..448300 (-) 582 WP_003690895.1 superoxide dismutase -
  NDM80_RS02310 (NDM80_02310) dnaB 448464..449870 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDM80_RS02315 (NDM80_02315) pilH 450024..450689 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDM80_RS02320 (NDM80_02320) pilV 450721..451332 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDM80_RS02325 (NDM80_02325) pilJ 451329..452279 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NDM80_RS02330 (NDM80_02330) pilK 452258..452869 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDM80_RS02335 (NDM80_02335) pilL 452871..453344 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDM80_RS02340 (NDM80_02340) - 453414..453722 (-) 309 WP_025456177.1 AzlD family protein -
  NDM80_RS02345 (NDM80_02345) - 453719..454429 (-) 711 Protein_460 AzlC family ABC transporter permease -
  NDM80_RS02350 (NDM80_02350) dut 454595..455047 (+) 453 WP_003699637.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24648.03 Da        Isoelectric Point: 8.8981

>NTDB_id=734372 NDM80_RS02315 WP_003699624.1 450024..450689(+) (pilH) [Neisseria gonorrhoeae strain 10723]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGWGMLAFGDKNGNKAYDGDVADVFLRSVVLNDDINDKRIDYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTT
DQHLTERSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=734372 NDM80_RS02315 WP_003699624.1 450024..450689(+) (pilH) [Neisseria gonorrhoeae strain 10723]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGTGGCGGATGTTTTCCTCCGCAGCGTGGTATTGAATGATGATATCAATGATAAGCGGATTGATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGACA
GACCAGCATCTTACAGAGCGATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.045

100

0.9