Detailed information NTG0734370

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4B24_RS07430
• Genome accession: NZ_CP120708
• Coordinates: 1586477..1587481 (+)
• Length: 334 a.a.
• NCBI ID: WP_003109327.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NY7723
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1581477..1592481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4B24_RS07400 (P4B24_07405)	fghA	1581569..1582420 (+)	852	WP_003109330.1	S-formylglutathione hydrolase	-
P4B24_RS07405 (P4B24_07410)	ispF	1582491..1582964 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4B24_RS07410 (P4B24_07415)	truD	1582961..1584028 (+)	1068	WP_003109329.1	tRNA pseudouridine(13) synthase TruD	-
P4B24_RS07415 (P4B24_07420)	surE	1584016..1584765 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4B24_RS07420 (P4B24_07425)	-	1584798..1585433 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4B24_RS07425 (P4B24_07430)	-	1585479..1586372 (+)	894	WP_009313547.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4B24_RS07430 (P4B24_07435)	rpoS	1586477..1587481 (+)	1005	WP_003109327.1	RNA polymerase sigma factor RpoS	Regulator
P4B24_RS07435 (P4B24_07440)	fdxA	1587908..1588231 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P4B24_RS07440 (P4B24_07445)	mutS	1588298..1590865 (-)	2568	WP_003109697.1	DNA mismatch repair protein MutS	-
P4B24_RS07445 (P4B24_07450)	-	1590991..1591998 (-)	1008	WP_003109698.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38265.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=734370 P4B24_RS07430 WP_003109327.1 1586477..1587481(+) (rpoS) [Pseudomonas aeruginosa strain NY7723]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRTTPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=734370 P4B24_RS07430 WP_003109327.1 1586477..1587481(+) (rpoS) [Pseudomonas aeruginosa strain NY7723]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGACAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAACTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653