Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   P4B24_RS00150 Genome accession   NZ_CP120708
Coordinates   34738..35763 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain NY7723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29738..40763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B24_RS00125 (P4B24_00125) - 29927..30244 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  P4B24_RS00130 (P4B24_00130) trkA 30393..31766 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  P4B24_RS00135 (P4B24_00135) rsmB 31793..33097 (-) 1305 WP_003111376.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  P4B24_RS00140 (P4B24_00140) fmt 33094..34038 (-) 945 WP_009877318.1 methionyl-tRNA formyltransferase -
  P4B24_RS00145 (P4B24_00145) def 34093..34599 (-) 507 WP_003107059.1 peptide deformylase -
  P4B24_RS00150 (P4B24_00150) tsaP 34738..35763 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  P4B24_RS00155 (P4B24_00155) dprA 35898..36986 (+) 1089 WP_023108719.1 DNA-processing protein DprA Machinery gene
  P4B24_RS00160 (P4B24_00160) - 37027..37584 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  P4B24_RS00165 (P4B24_00165) - 37594..38571 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  P4B24_RS00170 (P4B24_00170) hemF 38762..39679 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  P4B24_RS00175 (P4B24_00175) aroE 39737..40561 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=734352 P4B24_RS00150 WP_003097294.1 34738..35763(+) (tsaP) [Pseudomonas aeruginosa strain NY7723]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=734352 P4B24_RS00150 WP_003097294.1 34738..35763(+) (tsaP) [Pseudomonas aeruginosa strain NY7723]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAACTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393