Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PALA17_RS09455 Genome accession   NZ_CP106745
Coordinates   1969980..1970615 (+) Length   211 a.a.
NCBI ID   WP_012613901.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1964980..1975615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA17_RS09440 (PALA17_01873) - 1965686..1966930 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  PALA17_RS09445 (PALA17_01874) - 1967018..1967551 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PALA17_RS09450 (PALA17_01875) comA 1967682..1969907 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PALA17_RS09455 (PALA17_01876) exbB 1969980..1970615 (+) 636 WP_012613901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PALA17_RS09460 (PALA17_01877) - 1970612..1971052 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PALA17_RS09465 (PALA17_01878) lpxK 1971052..1972050 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PALA17_RS09470 (PALA17_01879) - 1972088..1972273 (+) 186 WP_003091157.1 Trm112 family protein -
  PALA17_RS09475 (PALA17_01880) kdsB 1972273..1973037 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PALA17_RS09480 (PALA17_01881) - 1973037..1973501 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  PALA17_RS09485 (PALA17_01882) murB 1973498..1974517 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.99 Da        Isoelectric Point: 6.2522

>NTDB_id=734336 PALA17_RS09455 WP_012613901.1 1969980..1970615(+) (exbB) [Pseudomonas aeruginosa strain PALA17]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQINGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=734336 PALA17_RS09455 WP_012613901.1 1969980..1970615(+) (exbB) [Pseudomonas aeruginosa strain PALA17]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAATGGCA
AACAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806