Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   N7220_RS07685 Genome accession   NZ_CP106736
Coordinates   1677265..1678674 (+) Length   469 a.a.
NCBI ID   WP_283150871.1    Uniprot ID   -
Organism   Silvimonas soli strain 17-6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1672265..1683674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7220_RS07660 - 1673751..1674755 (+) 1005 WP_283150867.1 KpsF/GutQ family sugar-phosphate isomerase -
  N7220_RS07665 - 1674778..1675296 (+) 519 WP_283150868.1 HAD family hydrolase -
  N7220_RS07670 lptC 1675306..1675887 (+) 582 WP_283150869.1 LPS export ABC transporter periplasmic protein LptC -
  N7220_RS07675 lptA 1675859..1676434 (+) 576 WP_283150870.1 lipopolysaccharide transport periplasmic protein LptA -
  N7220_RS07680 lptB 1676479..1677204 (+) 726 WP_283151413.1 LPS export ABC transporter ATP-binding protein -
  N7220_RS07685 rpoN/rpoN1 1677265..1678674 (+) 1410 WP_283150871.1 RNA polymerase factor sigma-54 Machinery gene
  N7220_RS07690 hpf 1678721..1679050 (+) 330 WP_283150872.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  N7220_RS07695 ptsN 1679366..1679839 (+) 474 WP_283150873.1 PTS IIA-like nitrogen regulatory protein PtsN -
  N7220_RS07700 hprK 1679820..1680764 (+) 945 WP_283150874.1 HPr(Ser) kinase/phosphatase -
  N7220_RS07705 rapZ 1680767..1681627 (+) 861 WP_283150875.1 RNase adapter RapZ -
  N7220_RS07710 - 1681614..1681997 (+) 384 WP_283151414.1 NusG domain II-containing protein -
  N7220_RS07715 - 1681978..1682523 (+) 546 WP_283150876.1 Gx transporter family protein -
  N7220_RS07720 - 1682520..1683128 (+) 609 WP_283150877.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 51959.18 Da        Isoelectric Point: 4.8652

>NTDB_id=734203 N7220_RS07685 WP_283150871.1 1677265..1678674(+) (rpoN/rpoN1) [Silvimonas soli strain 17-6]
MKQSLQLRLSQQLNLTPQLQQSIKLLQLSTLDFQTEIERYLLENPLLEQDGGGSNPSDSPEPVSGESDSTPQEPAYDGSG
DDMNWGSGTGNARNGDDDDDFDPATQVAKELTLREHLLDQAGVLRLPERDHAALAFMIDAVDDEGFLPMSLEELLEQIPP
EIVTHLELEIDDLAVALARLKQFDPVGVGARNTAEALGLQLRLVAPSPACELARQIVGQHLDLLAGRDYTKLKRLLKCDD
AALKAAQSVITSLNPRPAAQWAALTPRYVVPDVLVQKIKGQWQVRLNPAAMPRLRINQVYADILQRSEGGVLARELQEAK
WLVKSVQQRFETILRVAQAIVERQRAFFEHGEVAMRPLVLRDIAMELDLHESTVSRVTTQKYMTSPRGLLEFKYFFGSHV
DTEAGGECSATAIKALIKQMIQNEDKTRPLSDSAIAEALSGQGIVVARRTVAKYREGMNVPPVNLRKNL

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=734203 N7220_RS07685 WP_283150871.1 1677265..1678674(+) (rpoN/rpoN1) [Silvimonas soli strain 17-6]
ATGAAGCAATCCCTTCAACTGCGTCTTTCGCAGCAACTGAACCTCACCCCGCAGCTGCAGCAGTCAATCAAGCTGTTGCA
GCTGTCCACACTCGATTTTCAGACGGAAATCGAGCGTTACCTGCTGGAAAATCCGCTGCTGGAACAAGATGGTGGCGGCA
GTAACCCTTCCGACAGTCCCGAACCTGTTTCCGGCGAGAGCGACAGCACCCCGCAAGAACCGGCCTACGATGGCAGCGGC
GACGACATGAACTGGGGTAGCGGCACCGGCAATGCGCGCAACGGTGACGATGATGACGACTTCGATCCGGCCACCCAGGT
CGCCAAAGAGCTGACGCTGCGCGAGCATCTGCTGGATCAAGCGGGGGTGCTGCGTTTGCCCGAGCGCGACCATGCTGCCC
TGGCTTTCATGATCGACGCAGTGGACGATGAGGGATTTTTACCAATGTCCCTCGAAGAATTACTGGAACAAATCCCGCCG
GAGATCGTCACACATCTGGAGCTTGAAATTGATGACCTGGCCGTAGCACTGGCCAGACTCAAGCAGTTTGATCCCGTTGG
GGTGGGTGCCCGCAATACTGCGGAGGCTTTGGGCCTGCAGTTGCGCCTGGTTGCACCTTCTCCCGCTTGCGAGCTGGCAC
GACAGATCGTCGGACAACATCTCGATTTATTGGCCGGGCGTGACTACACTAAGCTCAAAAGGTTACTGAAATGTGACGAC
GCGGCACTGAAAGCCGCGCAAAGTGTGATCACCAGTCTGAATCCGCGCCCGGCAGCACAATGGGCGGCATTGACACCACG
TTACGTTGTACCTGACGTACTGGTGCAAAAGATCAAGGGGCAATGGCAGGTGAGACTCAATCCAGCCGCGATGCCGCGGT
TGCGCATCAATCAAGTCTATGCAGATATCCTGCAACGTAGCGAAGGCGGTGTGCTGGCGCGCGAGTTGCAAGAAGCCAAA
TGGCTGGTGAAAAGCGTGCAACAACGCTTTGAAACCATTCTGCGGGTCGCTCAGGCCATCGTTGAACGCCAGCGTGCGTT
TTTCGAACATGGTGAAGTCGCCATGCGCCCGCTCGTCCTGCGCGATATCGCCATGGAACTGGATCTGCATGAATCCACCG
TGTCCCGCGTTACTACCCAGAAATACATGACCAGCCCACGTGGCTTGCTGGAGTTCAAATACTTCTTCGGCAGTCACGTT
GACACCGAAGCCGGTGGCGAATGTTCGGCCACCGCCATCAAAGCGCTCATCAAACAGATGATCCAGAACGAAGACAAAAC
CCGGCCGCTCTCAGATAGCGCCATTGCCGAAGCTTTATCCGGGCAAGGGATCGTGGTTGCGCGGCGAACCGTTGCCAAGT
ACAGGGAGGGCATGAACGTTCCACCCGTCAATCTGCGCAAAAACCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(312-467)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.183

100

0.561