Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N7220_RS02420 Genome accession   NZ_CP106736
Coordinates   534909..536261 (-) Length   450 a.a.
NCBI ID   WP_283149885.1    Uniprot ID   -
Organism   Silvimonas soli strain 17-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 529909..541261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7220_RS02395 - 530374..530553 (+) 180 WP_283149880.1 DUF3149 domain-containing protein -
  N7220_RS02400 - 530635..532278 (-) 1644 WP_283149881.1 glycosyltransferase family 39 protein -
  N7220_RS02405 - 532377..532643 (-) 267 WP_283149882.1 type B 50S ribosomal protein L31 -
  N7220_RS02410 rho 532901..534157 (-) 1257 WP_283149883.1 transcription termination factor Rho -
  N7220_RS02415 trxA 534385..534711 (-) 327 WP_283149884.1 thioredoxin TrxA -
  N7220_RS02420 radA 534909..536261 (-) 1353 WP_283149885.1 DNA repair protein RadA Machinery gene
  N7220_RS02425 flgL 536377..537756 (-) 1380 WP_283149886.1 flagellar hook-associated protein FlgL -
  N7220_RS02430 flgK 537847..540045 (-) 2199 WP_283149887.1 flagellar hook-associated protein FlgK -
  N7220_RS02435 flgJ 540183..541082 (-) 900 WP_283149888.1 flagellar assembly peptidoglycan hydrolase FlgJ -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47999.35 Da        Isoelectric Point: 7.2151

>NTDB_id=734197 N7220_RS02420 WP_283149885.1 534909..536261(-) (radA) [Silvimonas soli strain 17-6]
MSKVKTLYVCQSCGGTSPKWQGQCPHCGDWNSLTEAVAEAKAPARFQSLAADGAIRQLSDVEAVDLPRTPTGMAELDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQALTQMSGSERVLYVSGEESAEQIALRAKRLQLATGPVGLFPEINLEKILATLER
EKPQVVVIDSIQTVYSDALTSAPGSVAQVRECSAQLTRAAKRSGISILLVGHVTKEGALAGPRVLEHIVDAVLYFEGDTH
SSFRLIRAIKNRFGAVNELGVFAMTDRGLKEVTNPSALFLSQHREPVAGSCVLVTQEGTRPMLVEIQALVDDTHAPQPRR
LAVGIEQNRLALLLAVLHRHAGIAVFDQDVFINAVGGVRINEPAADLAVLVAIVSSLKNRPLQEKLVVFGEVGLAGEVRP
VQRGQERLREAAKLGFTHAIVPHANRPRQPIEGMTVTAVERLADAMNAAL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=734197 N7220_RS02420 WP_283149885.1 534909..536261(-) (radA) [Silvimonas soli strain 17-6]
ATGAGCAAAGTTAAAACTCTTTACGTCTGTCAGTCCTGCGGTGGCACCTCGCCTAAATGGCAAGGCCAATGTCCGCATTG
CGGCGACTGGAATTCACTGACCGAGGCGGTTGCAGAAGCCAAAGCACCAGCGCGGTTTCAATCGCTGGCCGCAGATGGCG
CCATTCGGCAATTGTCCGATGTTGAAGCGGTCGATCTGCCGCGCACGCCCACCGGCATGGCGGAGCTGGATCGCGTGCTT
GGCGGTGGCTTGGTGCCCGGCGGCGTGGTGCTGATTGGCGGCGATCCAGGCATCGGCAAATCCACCTTGCTGTTGCAAGC
GTTGACGCAGATGTCGGGTAGCGAGCGGGTGTTGTATGTCAGCGGTGAAGAGTCCGCTGAGCAGATTGCCCTGCGTGCCA
AGCGGCTACAGTTGGCGACCGGGCCAGTAGGGCTGTTCCCGGAAATCAATCTGGAAAAGATTCTGGCCACGCTGGAGCGC
GAAAAACCACAGGTGGTGGTGATTGACTCGATCCAGACCGTTTATTCAGACGCGCTGACCTCGGCGCCCGGTAGCGTGGC
GCAGGTGCGTGAGTGTTCCGCACAATTGACCCGCGCCGCCAAACGCTCCGGCATCAGCATCTTGCTGGTGGGGCACGTGA
CCAAAGAGGGCGCGCTGGCTGGCCCGCGCGTGCTGGAACATATCGTCGATGCCGTCTTGTATTTTGAAGGCGATACGCAT
TCGAGCTTCCGGCTGATTCGGGCAATCAAGAACCGCTTTGGCGCGGTCAATGAACTTGGCGTGTTTGCCATGACGGATCG
GGGCCTGAAAGAGGTCACTAATCCATCCGCATTGTTCCTTAGCCAGCATCGCGAACCGGTGGCTGGTTCTTGCGTGTTAG
TGACGCAAGAAGGCACGCGGCCGATGCTGGTTGAAATCCAGGCGCTGGTCGATGACACCCACGCGCCACAGCCACGGCGG
CTGGCGGTGGGGATCGAGCAAAACCGGCTGGCCTTGTTGCTAGCGGTTTTGCATCGCCACGCGGGCATCGCCGTGTTTGA
TCAGGACGTGTTCATCAATGCGGTGGGTGGTGTGCGCATCAACGAGCCTGCAGCTGATCTGGCGGTGCTGGTGGCCATTG
TGTCATCGCTCAAAAACCGGCCGCTGCAGGAAAAACTGGTCGTGTTCGGTGAAGTGGGTCTGGCGGGCGAAGTGCGGCCG
GTGCAGCGTGGCCAGGAGCGGCTGCGCGAGGCTGCCAAGCTGGGCTTCACCCACGCTATCGTGCCGCATGCCAATCGCCC
GCGTCAGCCAATAGAAGGTATGACCGTGACCGCAGTTGAGCGGCTGGCTGATGCCATGAACGCAGCGTTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)

AAA domain (AAA_25)

(72-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.504
  radA Streptococcus mitis SK321

49.217

99.333

0.489
  radA Streptococcus mitis NCTC 12261

48.993

99.333

0.487
  radA Streptococcus pneumoniae TIGR4

50.943

94.222

0.48
  radA Streptococcus pneumoniae R6

50.943

94.222

0.48
  radA Streptococcus pneumoniae Rx1

50.943

94.222

0.48
  radA Streptococcus pneumoniae D39

50.943

94.222

0.48