Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   P4B20_RS09235 Genome accession   NZ_CP120706
Coordinates   1965368..1965697 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain NY11104     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1960368..1970697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B20_RS09220 (P4B20_09225) - 1961097..1962041 (+) 945 WP_031628069.1 NAD-dependent epimerase/dehydratase family protein -
  P4B20_RS09225 (P4B20_09230) - 1962142..1963167 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  P4B20_RS09230 (P4B20_09235) - 1963180..1965177 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  P4B20_RS09235 (P4B20_09240) comEA/comE1 1965368..1965697 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  P4B20_RS09245 (P4B20_09250) - 1965914..1967110 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  P4B20_RS09250 (P4B20_09255) uvrB 1967298..1969310 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=734175 P4B20_RS09235 WP_003104586.1 1965368..1965697(+) (comEA/comE1) [Pseudomonas aeruginosa strain NY11104]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=734175 P4B20_RS09235 WP_003104586.1 1965368..1965697(+) (comEA/comE1) [Pseudomonas aeruginosa strain NY11104]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385