Detailed information NTG0734170

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4B20_RS06755
• Genome accession: NZ_CP120706
• Coordinates: 1443031..1444035 (+)
• Length: 334 a.a.
• NCBI ID: WP_309253365.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NY11104
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1438031..1449035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4B20_RS06725 (P4B20_06730)	fghA	1438123..1438974 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
P4B20_RS06730 (P4B20_06735)	ispF	1439045..1439518 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4B20_RS06735 (P4B20_06740)	truD	1439515..1440582 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
P4B20_RS06740 (P4B20_06745)	surE	1440570..1441319 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4B20_RS06745 (P4B20_06750)	-	1441352..1441987 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4B20_RS06750 (P4B20_06755)	-	1442033..1442926 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4B20_RS06755 (P4B20_06760)	rpoS	1443031..1444035 (+)	1005	WP_309253365.1	RNA polymerase sigma factor RpoS	Regulator
P4B20_RS06760 (P4B20_06765)	fdxA	1444462..1444785 (-)	324	WP_003092272.1	ferredoxin FdxA	-
P4B20_RS06765 (P4B20_06770)	mutS	1444852..1447392 (-)	2541	WP_003163273.1	DNA mismatch repair protein MutS	-
P4B20_RS06770 (P4B20_06775)	-	1447647..1448747 (+)	1101	WP_071540874.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38234.44 Da
• Isoelectric Point: 5.0478

>NTDB_id=734170 P4B20_RS06755 WP_309253365.1 1443031..1444035(+) (rpoS) [Pseudomonas aeruginosa strain NY11104]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELIVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=734170 P4B20_RS06755 WP_309253365.1 1443031..1444035(+) (rpoS) [Pseudomonas aeruginosa strain NY11104]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCATCGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70 region 3 (Sigma70_r3) (181-253)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65