Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA11_RS23975 Genome accession   NZ_CP106680
Coordinates   5149016..5149573 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5144016..5154573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA11_RS23955 (PALA11_04758) pilR 5145292..5146629 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA11_RS23960 (PALA11_04759) thiO 5146675..5147769 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  PALA11_RS23965 (PALA11_04760) - 5147904..5148413 (+) 510 WP_031630870.1 GspH/FimT family pseudopilin -
  PALA11_RS23970 (PALA11_04761) - 5148519..5149025 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA11_RS23975 (PALA11_04762) pilV 5149016..5149573 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA11_RS23980 (PALA11_04763) pilW 5149570..5150394 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA11_RS23985 (PALA11_04764) pilX 5150391..5150978 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA11_RS23990 (PALA11_04765) pilY1 5150990..5154481 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=734109 PALA11_RS23975 WP_003119423.1 5149016..5149573(+) (pilV) [Pseudomonas aeruginosa strain PALA11]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=734109 PALA11_RS23975 WP_003119423.1 5149016..5149573(+) (pilV) [Pseudomonas aeruginosa strain PALA11]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995