Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   P4B18_RS23290 Genome accession   NZ_CP120705
Coordinates   4876306..4876662 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain NY11084     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4871306..4881662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B18_RS23265 (P4B18_23275) - 4871689..4872321 (-) 633 WP_010793189.1 DUF4823 domain-containing protein -
  P4B18_RS23270 (P4B18_23280) - 4872386..4873282 (-) 897 WP_003091113.1 radical SAM protein -
  P4B18_RS23275 (P4B18_23285) - 4873432..4874070 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  P4B18_RS23280 (P4B18_23290) - 4874156..4875289 (+) 1134 WP_003160629.1 aminotransferase class V-fold PLP-dependent enzyme -
  P4B18_RS23285 (P4B18_23295) - 4875515..4876291 (-) 777 WP_028681132.1 TatD family hydrolase -
  P4B18_RS23290 (P4B18_23300) pilZ 4876306..4876662 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  P4B18_RS23295 (P4B18_23305) - 4876696..4877682 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  P4B18_RS23300 (P4B18_23310) tmk 4877675..4878307 (-) 633 WP_003091125.1 dTMP kinase -
  P4B18_RS23305 (P4B18_23315) mltG 4878336..4879385 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  P4B18_RS23310 (P4B18_23320) pabC 4879391..4880206 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  P4B18_RS23315 (P4B18_23325) fabF 4880206..4881450 (-) 1245 WP_028681131.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=734107 P4B18_RS23290 WP_003091119.1 4876306..4876662(-) (pilZ) [Pseudomonas aeruginosa strain NY11084]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=734107 P4B18_RS23290 WP_003091119.1 4876306..4876662(-) (pilZ) [Pseudomonas aeruginosa strain NY11084]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449