Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   N7988_RS21565 Genome accession   NZ_CP106675
Coordinates   4209307..4210053 (-) Length   248 a.a.
NCBI ID   WP_000487013.1    Uniprot ID   A0A9W5QDK4
Organism   Bacillus cereus strain SRCM116293     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4204307..4215053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7988_RS21545 (N7988_21545) dnaG 4205068..4206864 (-) 1797 WP_262314100.1 DNA primase -
  N7988_RS21550 (N7988_21550) - 4206946..4207089 (-) 144 WP_000479733.1 hypothetical protein -
  N7988_RS21555 (N7988_21555) - 4207725..4208537 (-) 813 WP_000368937.1 pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator -
  N7988_RS21560 (N7988_21560) - 4208567..4209199 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  N7988_RS21565 (N7988_21565) recO 4209307..4210053 (-) 747 WP_000487013.1 DNA repair protein RecO Machinery gene
  N7988_RS21570 (N7988_21570) - 4210087..4210230 (-) 144 WP_000883924.1 YqzL family protein -
  N7988_RS21575 (N7988_21575) era 4210407..4211312 (-) 906 WP_001080229.1 GTPase Era -
  N7988_RS21580 (N7988_21580) - 4211305..4211703 (-) 399 WP_001086282.1 cytidine deaminase -
  N7988_RS21585 (N7988_21585) - 4211803..4212156 (-) 354 WP_000715469.1 diacylglycerol kinase family protein -
  N7988_RS21590 (N7988_21590) ybeY 4212153..4212623 (-) 471 WP_000054679.1 rRNA maturation RNase YbeY -
  N7988_RS21595 (N7988_21595) - 4212620..4214764 (-) 2145 WP_000091514.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28609.20 Da        Isoelectric Point: 8.0488

>NTDB_id=734042 N7988_RS21565 WP_000487013.1 4209307..4210053(-) (recO) [Bacillus cereus strain SRCM116293]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=734042 N7988_RS21565 WP_000487013.1 4209307..4210053(-) (recO) [Bacillus cereus strain SRCM116293]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCAGTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGACATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTTAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCGTATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552