Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   N7988_RS20935 Genome accession   NZ_CP106675
Coordinates   4104080..4104874 (-) Length   264 a.a.
NCBI ID   WP_021727703.1    Uniprot ID   A0A9X3FF97
Organism   Bacillus cereus strain SRCM116293     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4099080..4109874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7988_RS20910 (N7988_20910) - 4099604..4101676 (-) 2073 WP_000810974.1 sigma-54-dependent Fis family transcriptional regulator -
  N7988_RS20915 (N7988_20915) - 4101814..4102047 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  N7988_RS20920 (N7988_20920) - 4102097..4102825 (-) 729 WP_000172580.1 glycerophosphodiester phosphodiesterase -
  N7988_RS20925 (N7988_20925) - 4102876..4103022 (+) 147 WP_001247671.1 YycC family protein -
  N7988_RS20930 (N7988_20930) - 4103264..4103827 (-) 564 WP_000428232.1 PRK06770 family protein -
  N7988_RS20935 (N7988_20935) spo0A 4104080..4104874 (-) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  N7988_RS20940 (N7988_20940) spoIVB 4105165..4106463 (-) 1299 WP_002098091.1 SpoIVB peptidase -
  N7988_RS20945 (N7988_20945) recN 4106582..4108321 (-) 1740 WP_000947765.1 DNA repair protein RecN Machinery gene
  N7988_RS20950 (N7988_20950) argR 4108586..4109035 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29445.20 Da        Isoelectric Point: 7.1175

>NTDB_id=734039 N7988_RS20935 WP_021727703.1 4104080..4104874(-) (spo0A) [Bacillus cereus strain SRCM116293]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANTMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=734039 N7988_RS20935 WP_021727703.1 4104080..4104874(-) (spo0A) [Bacillus cereus strain SRCM116293]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACACTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCCACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818