Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P4B08_RS28025 Genome accession   NZ_CP120704
Coordinates   6056640..6057164 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain SE5356     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6051640..6062164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B08_RS28010 (P4B08_28025) aroB 6052753..6053859 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  P4B08_RS28015 (P4B08_28030) aroK 6053909..6054427 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P4B08_RS28020 (P4B08_28035) pilQ 6054439..6056586 (-) 2148 WP_309267272.1 type 4a pilus secretin PilQ Machinery gene
  P4B08_RS28025 (P4B08_28040) comL/pilP 6056640..6057164 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P4B08_RS28030 (P4B08_28045) pilO 6057161..6057784 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P4B08_RS28035 (P4B08_28050) pilN 6057781..6058377 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P4B08_RS28040 (P4B08_28055) pilM 6058377..6059441 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P4B08_RS28045 (P4B08_28060) - 6059626..6062097 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=734028 P4B08_RS28025 WP_003095836.1 6056640..6057164(-) (comL/pilP) [Pseudomonas aeruginosa strain SE5356]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=734028 P4B08_RS28025 WP_003095836.1 6056640..6057164(-) (comL/pilP) [Pseudomonas aeruginosa strain SE5356]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362