Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N7985_RS18140 Genome accession   NZ_CP106673
Coordinates   3510082..3510771 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM116268     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505082..3515771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS18105 (N7985_18105) flgN 3505262..3505744 (-) 483 WP_014481048.1 flagellar protein FlgN -
  N7985_RS18110 (N7985_18110) flgM 3505760..3506026 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  N7985_RS18115 (N7985_18115) yvyF 3506107..3506526 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N7985_RS18120 (N7985_18120) comFC 3506600..3507322 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  N7985_RS18125 (N7985_18125) comFB 3507286..3507582 (-) 297 WP_003227989.1 late competence protein ComFB -
  N7985_RS18130 (N7985_18130) comFA 3507642..3509033 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  N7985_RS18135 (N7985_18135) fakBA 3509139..3509984 (-) 846 WP_262319544.1 DegV family protein -
  N7985_RS18140 (N7985_18140) degU 3510082..3510771 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N7985_RS18145 (N7985_18145) degS 3510854..3512011 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N7985_RS18150 (N7985_18150) yvyE 3512228..3512881 (+) 654 WP_003227979.1 YigZ family protein -
  N7985_RS18155 (N7985_18155) tagV 3512881..3514065 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N7985_RS18160 (N7985_18160) tagO 3514138..3515214 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=733997 N7985_RS18140 WP_003219701.1 3510082..3510771(-) (degU) [Bacillus subtilis strain SRCM116268]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=733997 N7985_RS18140 WP_003219701.1 3510082..3510771(-) (degU) [Bacillus subtilis strain SRCM116268]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1