Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   N7985_RS06250 Genome accession   NZ_CP106673
Coordinates   1208844..1209965 (+) Length   373 a.a.
NCBI ID   WP_231573536.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116268     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1203844..1214965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7985_RS06215 (N7985_06215) yjbB 1204486..1205703 (+) 1218 WP_128472215.1 MFS transporter -
  N7985_RS06220 (N7985_06220) yjbC 1205868..1206446 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  N7985_RS06225 (N7985_06225) spx 1206627..1207022 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  N7985_RS06230 (N7985_06230) yjbE 1207065..1207721 (-) 657 WP_003232944.1 TerC family protein -
  N7985_RS06235 (N7985_06235) - 1207890..1208030 (+) 141 WP_119122854.1 hypothetical protein -
  N7985_RS06240 (N7985_06240) mecA 1207997..1208653 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  N7985_RS06245 (N7985_06245) - 1208648..1208770 (-) 123 WP_003245684.1 hypothetical protein -
  N7985_RS06250 (N7985_06250) coiA 1208844..1209965 (+) 1122 WP_231573536.1 competence protein CoiA Machinery gene
  N7985_RS06255 (N7985_06255) pepF 1210195..1212024 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  N7985_RS06260 (N7985_06260) - 1212062..1212229 (-) 168 WP_003244944.1 hypothetical protein -
  N7985_RS06265 (N7985_06265) spxH 1212544..1213443 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  N7985_RS06270 (N7985_06270) bhbI 1213440..1213838 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  N7985_RS06275 (N7985_06275) cwlQ 1214093..1214827 (-) 735 WP_041850976.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43853.87 Da        Isoelectric Point: 10.0622

>NTDB_id=733953 N7985_RS06250 WP_231573536.1 1208844..1209965(+) (coiA) [Bacillus subtilis strain SRCM116268]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTESFKQEGIIPQWIMGYSRLKRTASSFYQLSTFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKETNRL
RLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=733953 N7985_RS06250 WP_231573536.1 1208844..1209965(+) (coiA) [Bacillus subtilis strain SRCM116268]
ATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGAGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACACAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGAGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAACTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATTCATCGGGCAGGTGCAGGCGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAACAAATCGCCTT
AGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAAGGATTTCTTTATTTGTTTATGACGGATCTTGGAGATAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTCGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.928

100

0.989