Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   R9P_RS08820 Genome accession   NZ_AP024582
Coordinates   1862435..1863862 (-) Length   475 a.a.
NCBI ID   WP_073520220.1    Uniprot ID   -
Organism   Escherichia coli strain Ec387     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857435..1868862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9P_RS08790 (R9P_16970) yeeZ 1857490..1858314 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  R9P_RS08795 (R9P_16980) yeeY 1858360..1859289 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  R9P_RS08800 yoeI 1859504..1859566 (+) 63 WP_010723108.1 membrane protein YoeI -
  R9P_RS08805 (R9P_16990) plaP 1859556..1860914 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  R9P_RS08810 (R9P_17000) tsuA 1861093..1862151 (+) 1059 WP_032151755.1 thiosulfate utilization transporter TsuA/YeeE -
  R9P_RS08815 (R9P_17010) tsuB 1862165..1862392 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  R9P_RS08820 (R9P_17020) sbcB 1862435..1863862 (-) 1428 WP_073520220.1 exodeoxyribonuclease I Machinery gene
  R9P_RS08825 (R9P_17030) dacD 1864071..1865237 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  R9P_RS08830 (R9P_17040) sbmC 1865356..1865829 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  R9P_RS08835 (R9P_17050) yeeA 1866027..1867085 (+) 1059 WP_001200891.1 FUSC family protein -
  R9P_RS08840 (R9P_17060) tmaR 1867257..1867586 (+) 330 WP_000450409.1 DUF496 family protein -
  R9P_RS08845 (R9P_17070) - 1867687..1868130 (-) 444 WP_032151754.1 EutP/PduV family microcompartment system protein -
  R9P_RS08850 (R9P_17080) pduU 1868135..1868485 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4720

>NTDB_id=73395 R9P_RS08820 WP_073520220.1 1862435..1863862(-) (sbcB) [Escherichia coli strain Ec387]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=73395 R9P_RS08820 WP_073520220.1 1862435..1863862(-) (sbcB) [Escherichia coli strain Ec387]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment