Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   P5655_RS19615 Genome accession   NZ_CP120681
Coordinates   3640506..3640736 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain DSM 10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3635506..3645736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5655_RS19585 (P5655_19585) ridA 3635671..3636048 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  P5655_RS19590 (P5655_19590) spoVG 3636242..3636535 (+) 294 WP_003218346.1 septation regulator SpoVG -
  P5655_RS19595 (P5655_19595) glmU 3636728..3638098 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  P5655_RS19600 (P5655_19600) prsS 3638121..3639074 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  P5655_RS19605 (P5655_19605) rplYB 3639159..3639773 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  P5655_RS19610 (P5655_19610) pth 3639880..3640446 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  P5655_RS19615 (P5655_19615) subA/fin 3640506..3640736 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  P5655_RS19620 (P5655_19620) mfd 3640806..3644339 (+) 3534 WP_053399331.1 transcription-repair coupling factor -
  P5655_RS19625 (P5655_19625) spoVT 3644475..3645011 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=733928 P5655_RS19615 WP_003243417.1 3640506..3640736(+) (subA/fin) [Bacillus subtilis strain DSM 10]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=733928 P5655_RS19615 WP_003243417.1 3640506..3640736(+) (subA/fin) [Bacillus subtilis strain DSM 10]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1