Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N7980_RS20870 Genome accession   NZ_CP106671
Coordinates   4049195..4049485 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM116301     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4044195..4054485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS20855 (N7980_20855) yabE 4044390..4045703 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  N7980_RS20860 (N7980_20860) dayD 4045859..4046626 (-) 768 WP_014475570.1 TatD family hydrolase -
  N7980_RS20865 (N7980_20865) metG 4046706..4048700 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  N7980_RS20870 (N7980_20870) abrB 4049195..4049485 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  N7980_RS20875 (N7980_20875) rsmI 4049534..4050412 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  N7980_RS20880 (N7980_20880) yazA 4050387..4050686 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  N7980_RS20885 (N7980_20885) trmNF 4050673..4051416 (-) 744 WP_003226765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N7980_RS20890 (N7980_20890) yabA 4051475..4051834 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  N7980_RS20895 (N7980_20895) ricT 4051849..4052676 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  N7980_RS20900 (N7980_20900) holB 4052679..4053668 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  N7980_RS20905 (N7980_20905) yaaR 4053680..4054120 (-) 441 WP_009966249.1 YaaR family protein -
  N7980_RS20910 (N7980_20910) darA 4054133..4054462 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=733924 N7980_RS20870 WP_003226760.1 4049195..4049485(+) (abrB) [Bacillus subtilis strain SRCM116301]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=733924 N7980_RS20870 WP_003226760.1 4049195..4049485(+) (abrB) [Bacillus subtilis strain SRCM116301]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1