Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   N7980_RS19180 Genome accession   NZ_CP106671
Coordinates   3730172..3730570 (+) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3725172..3735570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS19155 (N7980_19155) hxlR 3725907..3726269 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  N7980_RS19160 (N7980_19160) hxlA 3726502..3727134 (+) 633 WP_041850680.1 3-hexulose-6-phosphate synthase -
  N7980_RS19165 (N7980_19165) hxlB 3727140..3727697 (+) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  N7980_RS19170 (N7980_19170) tlpC 3727807..3729528 (+) 1722 WP_021481821.1 methyl-accepting chemotaxis protein TlpC -
  N7980_RS19175 (N7980_19175) nucA/comI 3729696..3730145 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  N7980_RS19180 (N7980_19180) nin/comJ 3730172..3730570 (+) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  N7980_RS19185 (N7980_19185) bglC 3730607..3732040 (-) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  N7980_RS19190 (N7980_19190) yckD 3732194..3732526 (-) 333 WP_003246247.1 YckD family protein -
  N7980_RS19195 (N7980_19195) yckC 3732608..3733063 (-) 456 WP_024572178.1 RDD family protein -
  N7980_RS19200 (N7980_19200) - 3733083..3733280 (-) 198 WP_120363256.1 hypothetical protein -
  N7980_RS19205 (N7980_19205) yckB 3733441..3734304 (+) 864 WP_080121173.1 transporter substrate-binding domain-containing protein -
  N7980_RS19210 (N7980_19210) yckA 3734314..3734994 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=733920 N7980_RS19180 WP_021481824.1 3730172..3730570(+) (nin/comJ) [Bacillus subtilis strain SRCM116301]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=733920 N7980_RS19180 WP_021481824.1 3730172..3730570(+) (nin/comJ) [Bacillus subtilis strain SRCM116301]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGTTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992