Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N7980_RS15450 Genome accession   NZ_CP106671
Coordinates   2997478..2998056 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2992478..3003056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS15415 (N7980_15415) lepB 2992483..2992989 (-) 507 WP_003233128.1 signal peptidase I -
  N7980_RS15420 (N7980_15420) yhjE 2992991..2993614 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  N7980_RS15425 (N7980_15425) - 2993766..2994137 (+) 372 WP_014476361.1 hypothetical protein -
  N7980_RS15430 (N7980_15430) yhjC 2994336..2994536 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  N7980_RS15435 (N7980_15435) yhjB 2994533..2996002 (+) 1470 WP_029317574.1 sodium:solute symporter -
  N7980_RS15440 (N7980_15440) yhjA 2996046..2996315 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  N7980_RS15445 (N7980_15445) yhxD 2996532..2997431 (+) 900 WP_041851019.1 SDR family oxidoreductase -
  N7980_RS15450 (N7980_15450) comK 2997478..2998056 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  N7980_RS15455 (N7980_15455) yhzC 2998349..2998582 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  N7980_RS15460 (N7980_15460) yhxC 2998610..2999467 (-) 858 WP_021479616.1 SDR family oxidoreductase -
  N7980_RS15465 (N7980_15465) comW 2999579..3001108 (+) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  N7980_RS21650 hemAT 3001364..3001741 (+) 378 Protein_3057 heme-based aerotactic transducer HemAT -
  N7980_RS21655 - 3001748..3002545 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=733909 N7980_RS15450 WP_029317573.1 2997478..2998056(-) (comK) [Bacillus subtilis strain SRCM116301]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=733909 N7980_RS15450 WP_029317573.1 2997478..2998056(-) (comK) [Bacillus subtilis strain SRCM116301]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995