Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   N7980_RS14990 Genome accession   NZ_CP106671
Coordinates   2906842..2907795 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain SRCM116301     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901842..2912795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS14960 (N7980_14960) appD 2901961..2902947 (-) 987 WP_033883591.1 oligopeptide ABC transporter ATP-binding protein AppD -
  N7980_RS14965 (N7980_14965) yjaZ 2903139..2903924 (-) 786 WP_119899243.1 DUF2268 domain-containing protein -
  N7980_RS14970 (N7980_14970) fabF 2904000..2905241 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  N7980_RS14975 (N7980_14975) fabH 2905264..2906202 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  N7980_RS14980 (N7980_14980) yjzB 2906367..2906606 (+) 240 WP_003232972.1 spore coat protein YjzB -
  N7980_RS14985 (N7980_14985) comZ 2906636..2906827 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  N7980_RS14990 (N7980_14990) med 2906842..2907795 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  N7980_RS14995 (N7980_14995) - 2907886..2908443 (-) 558 WP_003232974.1 hypothetical protein -
  N7980_RS15000 (N7980_15000) - 2908525..2909259 (-) 735 WP_003245223.1 hypothetical protein -
  N7980_RS15005 (N7980_15005) yjzD 2909508..2909693 (+) 186 WP_003245236.1 YjzD family protein -
  N7980_RS15010 (N7980_15010) yjzC 2909739..2909918 (-) 180 WP_003245356.1 YjzC family protein -
  N7980_RS15015 (N7980_15015) argF 2910004..2910963 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=733906 N7980_RS14990 WP_003245494.1 2906842..2907795(-) (med) [Bacillus subtilis strain SRCM116301]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=733906 N7980_RS14990 WP_003245494.1 2906842..2907795(-) (med) [Bacillus subtilis strain SRCM116301]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1