Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   N7980_RS13465 Genome accession   NZ_CP106671
Coordinates   2633360..2633824 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain SRCM116301     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2628360..2638824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS13445 (N7980_13445) fadH 2629548..2630312 (-) 765 WP_041850885.1 2,4-dienoyl-CoA reductase -
  N7980_RS13450 (N7980_13450) ppeE 2630455..2631315 (+) 861 WP_041850886.1 metallophosphoesterase -
  N7980_RS13455 (N7980_13455) ltdD 2631372..2631866 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  N7980_RS13460 (N7980_13460) ykuC 2631942..2633234 (+) 1293 WP_014479656.1 MFS transporter -
  N7980_RS13465 (N7980_13465) kre 2633360..2633824 (+) 465 WP_003232406.1 YkyB family protein Regulator
  N7980_RS13470 (N7980_13470) cheV 2633868..2634779 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  N7980_RS13475 (N7980_13475) - 2634983..2635144 (+) 162 WP_014476654.1 hypothetical protein -
  N7980_RS13480 (N7980_13480) dapX 2635346..2636527 (+) 1182 WP_041850887.1 aminotransferase A -
  N7980_RS13485 (N7980_13485) kinA 2636537..2638357 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=733897 N7980_RS13465 WP_003232406.1 2633360..2633824(+) (kre) [Bacillus subtilis strain SRCM116301]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=733897 N7980_RS13465 WP_003232406.1 2633360..2633824(+) (kre) [Bacillus subtilis strain SRCM116301]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1