Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N7980_RS10835 Genome accession   NZ_CP106671
Coordinates   2032671..2033801 (-) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2028631..2035166 2032671..2033801 within 0


Gene organization within MGE regions


Location: 2028631..2035166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS10800 (N7980_10800) csaA 2028631..2028963 (+) 333 WP_032725963.1 chaperone CsaA -
  N7980_RS10805 (N7980_10805) aoxN 2029213..2030649 (-) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  N7980_RS10810 (N7980_10810) yobM 2030777..2031334 (+) 558 WP_038829958.1 SMI1/KNR4 family protein -
  N7980_RS10815 (N7980_10815) - 2031435..2031590 (+) 156 Protein_2126 T7SS effector LXG polymorphic toxin -
  N7980_RS10820 (N7980_10820) - 2031588..2031962 (+) 375 Protein_2127 UV damage repair protein UvrX -
  N7980_RS10825 (N7980_10825) - 2032184..2032384 (+) 201 WP_021481449.1 hypothetical protein -
  N7980_RS10830 (N7980_10830) - 2032538..2032681 (-) 144 WP_153801665.1 hypothetical protein -
  N7980_RS10835 (N7980_10835) rapC 2032671..2033801 (-) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  N7980_RS21635 (N7980_10840) - 2033934..2034011 (-) 78 WP_227057947.1 phage holin -
  N7980_RS10845 (N7980_10845) - 2034792..2035166 (-) 375 WP_021481445.1 YoqO family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=733890 N7980_RS10835 WP_021481447.1 2032671..2033801(-) (rapC) [Bacillus subtilis strain SRCM116301]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=733890 N7980_RS10835 WP_021481447.1 2032671..2033801(-) (rapC) [Bacillus subtilis strain SRCM116301]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455