Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N7980_RS10030 Genome accession   NZ_CP106671
Coordinates   1901889..1902509 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1896889..1907509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS10010 (N7980_10010) dnaD 1897175..1897873 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  N7980_RS10015 (N7980_10015) nth 1897892..1898551 (+) 660 WP_009967580.1 endonuclease III -
  N7980_RS10020 (N7980_10020) ypoC 1898548..1899042 (+) 495 WP_041849962.1 YpoC family protein -
  N7980_RS10025 (N7980_10025) ponA 1899117..1901867 (-) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  N7980_RS10030 (N7980_10030) recU 1901889..1902509 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  N7980_RS10035 (N7980_10035) yppC 1902550..1903512 (+) 963 WP_041849960.1 DUF2515 domain-containing protein -
  N7980_RS10040 (N7980_10040) sspM 1903537..1903641 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  N7980_RS10045 (N7980_10045) yppD 1903840..1904085 (+) 246 WP_041849959.1 DUF5446 family protein -
  N7980_RS10050 (N7980_10050) yppE 1904131..1904502 (+) 372 WP_021481525.1 YppE family protein -
  N7980_RS10055 (N7980_10055) yppF 1904541..1904729 (-) 189 WP_003230690.1 YppF family protein -
  N7980_RS10060 (N7980_10060) sppG 1904917..1905294 (+) 378 WP_004398696.1 YppG family protein -
  N7980_RS10065 (N7980_10065) ypqA 1905315..1905734 (-) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  N7980_RS10070 (N7980_10070) ptsA 1905872..1906378 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=733889 N7980_RS10030 WP_004399067.1 1901889..1902509(-) (recU) [Bacillus subtilis strain SRCM116301]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=733889 N7980_RS10030 WP_004399067.1 1901889..1902509(-) (recU) [Bacillus subtilis strain SRCM116301]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1