Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   N7980_RS08525 Genome accession   NZ_CP106671
Coordinates   1635955..1636722 (+) Length   255 a.a.
NCBI ID   WP_041850024.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1630955..1641722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS08495 (N7980_08495) pgpH 1631251..1633386 (+) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -
  N7980_RS08500 (N7980_08500) ybeY 1633387..1633860 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  N7980_RS08505 (N7980_08505) unpK 1633841..1634212 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  N7980_RS08510 (N7980_08510) - 1634331..1634741 (+) 411 WP_003230049.1 cytidine deaminase -
  N7980_RS08515 (N7980_08515) era 1634722..1635627 (+) 906 WP_003230051.1 GTPase Era -
  N7980_RS08520 (N7980_08520) yqzL 1635775..1635918 (+) 144 WP_003230053.1 YqzL family protein -
  N7980_RS08525 (N7980_08525) recO 1635955..1636722 (+) 768 WP_041850024.1 DNA repair protein RecO Machinery gene
  N7980_RS08530 (N7980_08530) glyQ 1637019..1637906 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  N7980_RS08535 (N7980_08535) glyS 1637899..1639938 (+) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  N7980_RS08540 (N7980_08540) ccpN 1640071..1640709 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  N7980_RS08545 (N7980_08545) ppsR 1640735..1641547 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29376.06 Da        Isoelectric Point: 8.3080

>NTDB_id=733877 N7980_RS08525 WP_041850024.1 1635955..1636722(+) (recO) [Bacillus subtilis strain SRCM116301]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHFMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=733877 N7980_RS08525 WP_041850024.1 1635955..1636722(+) (recO) [Bacillus subtilis strain SRCM116301]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTAGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTAAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATTTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992