Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R9P_RS05890 Genome accession   NZ_AP024582
Coordinates   1214996..1215733 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Ec387     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1209996..1220733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9P_RS05860 (R9P_11320) yfiL 1210154..1210519 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  R9P_RS05865 (R9P_11330) aroF 1210729..1211799 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  R9P_RS05870 (R9P_11340) tyrA 1211810..1212931 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  R9P_RS05875 (R9P_11350) pheA 1212974..1214134 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  R9P_RS05880 pheL 1214233..1214280 (-) 48 WP_010723158.1 phe operon leader peptide -
  R9P_RS05885 (R9P_11360) raiA 1214384..1214725 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  R9P_RS05890 (R9P_11370) comL 1214996..1215733 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  R9P_RS05895 (R9P_11380) rluD 1215868..1216848 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R9P_RS05900 (R9P_11390) yfiH 1216845..1217576 (+) 732 WP_001402419.1 purine nucleoside phosphorylase YfiH -
  R9P_RS05905 (R9P_11400) clpC 1217706..1220279 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=73386 R9P_RS05890 WP_000197686.1 1214996..1215733(-) (comL) [Escherichia coli strain Ec387]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=73386 R9P_RS05890 WP_000197686.1 1214996..1215733(-) (comL) [Escherichia coli strain Ec387]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment