Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N7980_RS00095 Genome accession   NZ_CP106671
Coordinates   17725..18243 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM116301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12725..23243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS00075 (N7980_00075) yyzM 13799..14005 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  N7980_RS00080 (N7980_00080) yyaE 14056..16059 (+) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  N7980_RS00085 (N7980_00085) ychF 16186..17286 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  N7980_RS00090 (N7980_00090) rpsF 17397..17684 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  N7980_RS00095 (N7980_00095) ssbA 17725..18243 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  N7980_RS00100 (N7980_00100) rpsR 18287..18526 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  N7980_RS00105 (N7980_00105) xth 18591..19349 (+) 759 WP_015250782.1 exodeoxyribonuclease III -
  N7980_RS00110 (N7980_00110) ccpB 19409..20344 (+) 936 WP_015715076.1 transcriptional regulator CcpB -
  N7980_RS00115 (N7980_00115) yyaH 20400..20780 (+) 381 WP_015715075.1 VOC family protein -
  N7980_RS00120 (N7980_00120) maa 20796..21350 (+) 555 WP_015250785.1 sugar O-acetyltransferase -
  N7980_RS00125 (N7980_00125) yyaJ 21384..22739 (-) 1356 WP_262319546.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=733848 N7980_RS00095 WP_003219228.1 17725..18243(+) (ssbA) [Bacillus subtilis strain SRCM116301]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=733848 N7980_RS00095 WP_003219228.1 17725..18243(+) (ssbA) [Bacillus subtilis strain SRCM116301]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378