Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N8R31_RS07670 Genome accession   NZ_CP106665
Coordinates   1643905..1644531 (+) Length   208 a.a.
NCBI ID   WP_059308343.1    Uniprot ID   A0A9X3YCJ6
Organism   Leclercia adecarboxylata strain QDSM01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638905..1649531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8R31_RS07650 (N8R31_07635) - 1639299..1641059 (-) 1761 WP_338534483.1 Lon protease family protein -
  N8R31_RS07655 (N8R31_07640) matP 1641246..1641701 (+) 456 WP_032617400.1 macrodomain Ter protein MatP -
  N8R31_RS07660 (N8R31_07645) ompA 1641768..1642823 (-) 1056 WP_103792031.1 porin OmpA -
  N8R31_RS07665 (N8R31_07650) sulA 1643178..1643687 (-) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  N8R31_RS07670 (N8R31_07655) sxy/tfoX 1643905..1644531 (+) 627 WP_059308343.1 TfoX/Sxy family DNA transformation protein Regulator
  N8R31_RS07675 (N8R31_07660) yccS 1644516..1646651 (-) 2136 WP_338534484.1 YccS family putative transporter -
  N8R31_RS07680 (N8R31_07665) - 1646670..1647116 (-) 447 WP_032617407.1 YccF domain-containing protein -
  N8R31_RS07685 (N8R31_07670) helD 1647240..1649294 (+) 2055 WP_285125444.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23878.43 Da        Isoelectric Point: 9.1279

>NTDB_id=733829 N8R31_RS07670 WP_059308343.1 1643905..1644531(+) (sxy/tfoX) [Leclercia adecarboxylata strain QDSM01]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPELRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=733829 N8R31_RS07670 WP_059308343.1 1643905..1644531(+) (sxy/tfoX) [Leclercia adecarboxylata strain QDSM01]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACGTCTTATCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCACTTGAAGCCGCGCG
GCGGGAGCGCCGTGAGCGGTACAAACGCGACAGGCTGAAAGATTTACCCAATCTTAATTTTCAGCTTGAGATTCTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTGAAGATCAGAGCGCTTAAC
AAGCATCTGAGTTACAAAGTGCTGTTTGCGCTGGAGGGGGCGATAGTGGGGCTGCATGAAGCAGCGCTCCCGGAGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTGCCGGTAGAGAACAGTCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567