Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N7921_RS11100 Genome accession   NZ_CP106652
Coordinates   2147422..2148057 (+) Length   211 a.a.
NCBI ID   WP_095408853.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2142422..2153057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS11060 (N7921_11060) - 2142572..2143690 (+) 1119 WP_224928710.1 NADH-dependent flavin oxidoreductase -
  N7921_RS11065 (N7921_11065) - 2143749..2144255 (-) 507 WP_095408850.1 PTS sugar transporter subunit IIA -
  N7921_RS11070 (N7921_11070) - 2144424..2144843 (+) 420 WP_095408851.1 Hsp20/alpha crystallin family protein -
  N7921_RS11075 (N7921_11075) - 2144864..2145322 (-) 459 WP_238409343.1 YppG family protein -
  N7921_RS11080 (N7921_11080) - 2145430..2145810 (-) 381 WP_238409344.1 YppE family protein -
  N7921_RS11085 (N7921_11085) - 2145860..2146096 (-) 237 WP_144470939.1 DUF5446 family protein -
  N7921_RS11090 (N7921_11090) sspM 2146291..2146395 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  N7921_RS11095 (N7921_11095) - 2146419..2147375 (-) 957 WP_048239359.1 DUF2515 domain-containing protein -
  N7921_RS11100 (N7921_11100) recU 2147422..2148057 (+) 636 WP_095408853.1 Holliday junction resolvase RecU Machinery gene
  N7921_RS11105 (N7921_11105) - 2148077..2150776 (+) 2700 WP_144484480.1 PBP1A family penicillin-binding protein -
  N7921_RS11110 (N7921_11110) - 2150814..2151323 (-) 510 WP_144470943.1 YpoC family protein -
  N7921_RS11115 (N7921_11115) nth 2151320..2151982 (-) 663 WP_144484483.1 endonuclease III -
  N7921_RS11120 (N7921_11120) - 2152000..2152704 (-) 705 WP_095408857.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.63 Da        Isoelectric Point: 9.6581

>NTDB_id=733719 N7921_RS11100 WP_095408853.1 2147422..2148057(+) (recU) [Bacillus safensis strain 33.4]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQQ
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=733719 N7921_RS11100 WP_095408853.1 2147422..2148057(+) (recU) [Bacillus safensis strain 33.4]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACGGACTATAACGGGGTGTACAAAGGTCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCAGGTCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697