Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   N7921_RS09615 Genome accession   NZ_CP106652
Coordinates   1858173..1858553 (+) Length   126 a.a.
NCBI ID   WP_223250982.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1853173..1863553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS09605 (N7921_09605) - 1853693..1856836 (+) 3144 WP_263640207.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  N7921_RS09610 (N7921_09610) - 1857030..1857938 (+) 909 WP_039178896.1 trypsin-like serine peptidase -
  N7921_RS09615 (N7921_09615) nucA/comI 1858173..1858553 (+) 381 WP_223250982.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  N7921_RS09620 (N7921_09620) - 1858700..1859548 (+) 849 WP_263640208.1 STAS domain-containing protein -
  N7921_RS09625 (N7921_09625) - 1859581..1860123 (-) 543 WP_041109224.1 IseA DL-endopeptidase inhibitor family protein -
  N7921_RS09630 (N7921_09630) - 1860419..1860868 (+) 450 WP_041109226.1 hypothetical protein -
  N7921_RS09635 (N7921_09635) lexA 1860914..1861534 (-) 621 WP_034283422.1 transcriptional repressor LexA -
  N7921_RS09640 (N7921_09640) yneA 1861693..1862004 (+) 312 WP_024425130.1 cell division suppressor protein YneA -
  N7921_RS09645 (N7921_09645) - 1862022..1862669 (+) 648 WP_024427081.1 YneB family resolvase-like protein -
  N7921_RS09650 (N7921_09650) - 1862739..1862969 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13713.38 Da        Isoelectric Point: 8.5068

>NTDB_id=733718 N7921_RS09615 WP_223250982.1 1858173..1858553(+) (nucA/comI) [Bacillus safensis strain 33.4]
MGTLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQDAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=733718 N7921_RS09615 WP_223250982.1 1858173..1858553(+) (nucA/comI) [Bacillus safensis strain 33.4]
ATGGGCACGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGTGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGATGCCATTCGAAAAGGGCATTCAGATGTTTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGCCATCAAATCAGCGGGTTTCCTGATGGAAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556