Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N7921_RS07805 Genome accession   NZ_CP106652
Coordinates   1489394..1489672 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus safensis strain 33.4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1484394..1494672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS07780 (N7921_07780) - 1484492..1484767 (-) 276 WP_095408381.1 hypothetical protein -
  N7921_RS07785 (N7921_07785) - 1484911..1486530 (+) 1620 WP_039178203.1 ABC-F family ATP-binding cassette domain-containing protein -
  N7921_RS07790 (N7921_07790) - 1486565..1487797 (-) 1233 WP_095408383.1 aminopeptidase -
  N7921_RS07795 (N7921_07795) - 1487904..1488035 (-) 132 WP_003210922.1 protein YkpC -
  N7921_RS07800 (N7921_07800) mreBH 1488110..1489117 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  N7921_RS07805 (N7921_07805) abrB 1489394..1489672 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  N7921_RS07810 (N7921_07810) - 1489817..1491127 (+) 1311 WP_205185094.1 ATP-binding protein -
  N7921_RS07815 (N7921_07815) - 1491132..1491968 (+) 837 WP_205185092.1 gamma-glutamylcyclotransferase -
  N7921_RS07820 (N7921_07820) - 1492006..1492674 (+) 669 WP_008345123.1 potassium channel family protein -
  N7921_RS07825 (N7921_07825) ade 1492937..1494667 (+) 1731 WP_263640186.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=733713 N7921_RS07805 WP_017359400.1 1489394..1489672(+) (abrB) [Bacillus safensis strain 33.4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=733713 N7921_RS07805 WP_017359400.1 1489394..1489672(+) (abrB) [Bacillus safensis strain 33.4]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543