Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P3L36_RS02105 Genome accession   NZ_CP120654
Coordinates   355533..356132 (-) Length   199 a.a.
NCBI ID   WP_000248792.1    Uniprot ID   Q3K380
Organism   Streptococcus agalactiae strain Guangzhou-SAG036     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350533..361132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L36_RS02090 (P3L36_02090) nadE 350991..351812 (+) 822 WP_000174855.1 ammonia-dependent NAD(+) synthetase -
  P3L36_RS02095 (P3L36_02095) pepC 351925..353259 (+) 1335 WP_001293160.1 aminopeptidase C -
  P3L36_RS02100 (P3L36_02100) pbp1a 353306..355546 (-) 2241 WP_000628365.1 penicillin-binding protein PBP1A -
  P3L36_RS02105 (P3L36_02105) recU 355533..356132 (-) 600 WP_000248792.1 Holliday junction resolvase RecU Machinery gene
  P3L36_RS02110 (P3L36_02110) - 356207..356725 (+) 519 WP_000843096.1 DUF1273 domain-containing protein -
  P3L36_RS02115 (P3L36_02115) gpsB 356846..357178 (+) 333 WP_000146544.1 cell division regulator GpsB -
  P3L36_RS02125 (P3L36_02125) - 357648..358802 (+) 1155 WP_000664851.1 class I SAM-dependent RNA methyltransferase -
  P3L36_RS02130 (P3L36_02130) - 358815..360302 (+) 1488 WP_001287858.1 cell division site-positioning protein MapZ family protein -
  P3L36_RS02135 (P3L36_02135) - 360527..361009 (-) 483 WP_000159882.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23101.69 Da        Isoelectric Point: 9.8314

>NTDB_id=733709 P3L36_RS02105 WP_000248792.1 355533..356132(-) (recU) [Streptococcus agalactiae strain Guangzhou-SAG036]
MVNYPHQLIRKTTVTKSKKKKIDFANRGMSFEAAINATNDYYLSHELAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRQKTAMPMKNFHAHQIEHMANVLQQKGICFVLLHFSTLKETYLLPANELISFYQIDKGN
KSMPIDYIRKNGFFVKESAFPQVPYLDIIEEKLLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=733709 P3L36_RS02105 WP_000248792.1 355533..356132(-) (recU) [Streptococcus agalactiae strain Guangzhou-SAG036]
ATGGTTAACTATCCACATCAGCTTATTCGGAAAACAACAGTTACAAAATCAAAGAAAAAGAAAATCGATTTTGCCAACCG
TGGTATGTCATTTGAAGCTGCTATCAATGCAACCAATGACTACTATTTGTCTCACGAATTAGCTGTCATTCATAAGAAAC
CAACGCCAGTACAAATCGTCAAGGTAGATTATCCTAAACGTAGTCGTGCCAAGATTGTAGAAGCTTATTTTAGACAAGCT
TCTACTACTGATTATTCTGGTGTTTACAAAGGTTACTATATTGACTTTGAAGCCAAAGAAACCCGGCAGAAAACTGCTAT
GCCTATGAAAAATTTTCATGCTCACCAAATAGAGCACATGGCAAATGTATTACAGCAAAAAGGGATTTGCTTTGTCTTGC
TTCATTTTTCCACACTTAAGGAAACCTATCTACTCCCTGCTAATGAGTTAATTTCATTTTATCAGATTGATAAAGGCAAT
AAATCAATGCCTATTGATTATATCAGAAAAAATGGATTTTTCGTAAAGGAGAGTGCCTTTCCTCAAGTCCCTTACTTAGA
TATTATTGAAGAAAAATTATTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K380

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

98.995

0.477