Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N7921_RS05950 Genome accession   NZ_CP106652
Coordinates   1142839..1143417 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain 33.4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137839..1148417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS20045 - 1138335..1138946 (-) 612 WP_404841197.1 methyl-accepting chemotaxis protein -
  N7921_RS20050 - 1139091..1139630 (-) 540 Protein_1118 protoglobin family protein -
  N7921_RS05935 (N7921_05935) - 1139722..1141254 (-) 1533 WP_144485578.1 FAD-dependent oxidoreductase -
  N7921_RS05940 (N7921_05940) - 1141396..1142256 (+) 861 WP_024425480.1 SDR family oxidoreductase -
  N7921_RS05945 (N7921_05945) - 1142313..1142549 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  N7921_RS05950 (N7921_05950) comK 1142839..1143417 (+) 579 WP_024425481.1 competence protein ComK Regulator
  N7921_RS05955 (N7921_05955) - 1143735..1144217 (+) 483 WP_144485576.1 hypothetical protein -
  N7921_RS05960 (N7921_05960) - 1144249..1145688 (-) 1440 WP_144485574.1 PLP-dependent aminotransferase family protein -
  N7921_RS05965 (N7921_05965) - 1145834..1147003 (+) 1170 WP_144485573.1 MFS transporter -
  N7921_RS05970 (N7921_05970) - 1147069..1147347 (+) 279 WP_111290257.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=733700 N7921_RS05950 WP_024425481.1 1142839..1143417(+) (comK) [Bacillus safensis strain 33.4]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=733700 N7921_RS05950 WP_024425481.1 1142839..1143417(+) (comK) [Bacillus safensis strain 33.4]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATATCCCATAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTTACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGAACAGCATATCTCCGAACGAAATTTCAAGATCGTCTGGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGAGA
GCTTCGCAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62