Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   N7921_RS01935 Genome accession   NZ_CP106652
Coordinates   357374..357802 (-) Length   142 a.a.
NCBI ID   WP_144472865.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 352374..362802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS01905 (N7921_01905) - 352534..352863 (+) 330 WP_095407716.1 YckD family protein -
  N7921_RS01910 (N7921_01910) - 352908..353672 (-) 765 WP_144485913.1 MBL fold metallo-hydrolase -
  N7921_RS01915 (N7921_01915) - 353788..354204 (+) 417 WP_048238129.1 Lrp/AsnC family transcriptional regulator -
  N7921_RS01920 (N7921_01920) - 354234..355040 (+) 807 WP_263639915.1 aminoglycoside N(3)-acetyltransferase -
  N7921_RS01925 (N7921_01925) - 355042..355428 (-) 387 WP_144485911.1 competence protein ComJ -
  N7921_RS01930 (N7921_01930) - 355549..357246 (-) 1698 WP_144485909.1 methyl-accepting chemotaxis protein -
  N7921_RS01935 (N7921_01935) nucA/comI 357374..357802 (-) 429 WP_144472865.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  N7921_RS01940 (N7921_01940) - 358170..360239 (+) 2070 WP_263639916.1 hydantoinase/oxoprolinase family protein -
  N7921_RS01945 (N7921_01945) - 360229..362217 (+) 1989 WP_263639917.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15856.81 Da        Isoelectric Point: 5.9135

>NTDB_id=733694 N7921_RS01935 WP_144472865.1 357374..357802(-) (nucA/comI) [Bacillus safensis strain 33.4]
MKLLKIILLLLLIVIGVATGYIKLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDQS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVSPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=733694 N7921_RS01935 WP_144472865.1 357374..357802(-) (nucA/comI) [Bacillus safensis strain 33.4]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTATTAATTGTCATTGGTGTAGCAACAGGCTATATCAAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACCATTCACTTTCCATCAGATCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGCACAATTGACCGTAAACATAGCGATGAGCAGAGAGATCAATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCAATGGCGATGTGTAAAGAAGGGGGCACAGGAGC
TTCTGTCAAATATGTAAGCCCTTCAGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAACTATCAGATGATCCTGATG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.698

74.648

0.535