Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   N7921_RS00020 Genome accession   NZ_CP106652
Coordinates   3157..4269 (+) Length   370 a.a.
NCBI ID   WP_061406450.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS00005 (N7921_00005) dnaA 101..1441 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  N7921_RS00010 (N7921_00010) dnaN 1638..2774 (+) 1137 WP_048238334.1 DNA polymerase III subunit beta -
  N7921_RS00015 (N7921_00015) yaaA 2925..3140 (+) 216 WP_048238335.1 S4 domain-containing protein YaaA -
  N7921_RS00020 (N7921_00020) recF 3157..4269 (+) 1113 WP_061406450.1 DNA replication/repair protein RecF Machinery gene
  N7921_RS00025 (N7921_00025) remB 4287..4532 (+) 246 WP_056766786.1 extracellular matrix regulator RemB -
  N7921_RS00030 (N7921_00030) gyrB 4590..6506 (+) 1917 WP_111292035.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  N7921_RS00035 (N7921_00035) gyrA 6739..9243 (+) 2505 WP_144484291.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42545.61 Da        Isoelectric Point: 7.3662

>NTDB_id=733689 N7921_RS00020 WP_061406450.1 3157..4269(+) (recF) [Bacillus safensis strain 33.4]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=733689 N7921_RS00020 WP_061406450.1 3157..4269(+) (recF) [Bacillus safensis strain 33.4]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAAGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCACAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACAGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTTGAAAAATGGGCCCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAAGGTCGTGTACAGACCTTCGTCACTACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835