Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N8O08_RS14895 Genome accession   NZ_CP104976
Coordinates   3067294..3067920 (-) Length   208 a.a.
NCBI ID   WP_223562957.1    Uniprot ID   -
Organism   Enterobacter sp. 155105     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3062294..3072920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8O08_RS14880 (N8O08_14880) helD 3062531..3064585 (-) 2055 WP_223562959.1 DNA helicase IV -
  N8O08_RS14885 (N8O08_14885) - 3064709..3065155 (+) 447 WP_023311032.1 YccF domain-containing protein -
  N8O08_RS14890 (N8O08_14890) yccS 3065175..3067337 (+) 2163 WP_223562958.1 YccS family putative transporter -
  N8O08_RS14895 (N8O08_14895) sxy/tfoX 3067294..3067920 (-) 627 WP_223562957.1 TfoX/Sxy family DNA transformation protein Regulator
  N8O08_RS14900 (N8O08_14900) sulA 3068138..3068647 (+) 510 WP_121425762.1 SOS-induced cell division inhibitor SulA -
  N8O08_RS14905 (N8O08_14905) ompA 3069002..3070057 (+) 1056 WP_223562956.1 porin OmpA -
  N8O08_RS14910 (N8O08_14910) matP 3070122..3070574 (-) 453 WP_223562955.1 macrodomain Ter protein MatP -
  N8O08_RS14915 (N8O08_14915) - 3070761..3072521 (+) 1761 WP_223562954.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23950.47 Da        Isoelectric Point: 9.2151

>NTDB_id=733648 N8O08_RS14895 WP_223562957.1 3067294..3067920(-) (sxy/tfoX) [Enterobacter sp. 155105]
MKKISYERIYKSQEYLSPLGDIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCAKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIVGLHEAALPADIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=733648 N8O08_RS14895 WP_223562957.1 3067294..3067920(-) (sxy/tfoX) [Enterobacter sp. 155105]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCTCAGGAATACCTTTCACCGCTGGGCGATATTCATCATCGCGCACT
GTTTGGAGGCTACACCCTCGCGGTAGATGATGCGGTTTTTGCCATGGTTTCTGATGGTGAACTTTATCTCCGTGCCTGTG
AGGAGAGTGCGAAATACTGTGCGAAAAATGCCTCTTCTTTTTTGACGTTGATGAAGCGAGGCCGTCCTGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGAGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAGCGAAACCGCCTAAAGGATCTGCCAAACCTGACCTTTCAGCTTGAGGTCTTGCTCT
TTGAAGCTGGCATCACCAATGAGGAAACGCTGCGGGAGCTTGGTGCCAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCAGTATTAAAGTTCTCTTTGCGCTGGAAGGGGCTATCGTGGGGCTGCATGAGGCGGCACTCCCGGCAGACAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562