Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P6O79_RS22540 Genome accession   NZ_CP120633
Coordinates   4615644..4616249 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain USVAST219     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4610644..4621249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6O79_RS22510 (P6O79_22510) rsmS 4611346..4611510 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  P6O79_RS22515 (P6O79_22515) priC 4611524..4612051 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  P6O79_RS22520 (P6O79_22520) ybaN 4612121..4612498 (+) 378 WP_001188900.1 DUF454 family protein -
  P6O79_RS22525 (P6O79_22525) apt 4612651..4613202 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P6O79_RS22530 (P6O79_22530) dnaX 4613331..4615262 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  P6O79_RS22535 (P6O79_22535) ybaB 4615315..4615644 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P6O79_RS22540 (P6O79_22540) recR 4615644..4616249 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P6O79_RS22545 (P6O79_22545) htpG 4616359..4618233 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  P6O79_RS22550 (P6O79_22550) adk 4618414..4619058 (+) 645 WP_001220233.1 adenylate kinase -
  P6O79_RS22555 (P6O79_22555) hemH 4619190..4620152 (+) 963 WP_001250114.1 ferrochelatase -
  P6O79_RS22560 (P6O79_22560) aes 4620149..4621108 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=733593 P6O79_RS22540 WP_001195025.1 4615644..4616249(+) (recR) [Escherichia coli strain USVAST219]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=733593 P6O79_RS22540 WP_001195025.1 4615644..4616249(+) (recR) [Escherichia coli strain USVAST219]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443