Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5860_RS14625 Genome accession   NZ_CP104921
Coordinates   3027461..3028075 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain AHM21C2861I     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022461..3033075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5860_RS14610 (N5860_14595) helD 3022685..3024739 (-) 2055 WP_149335616.1 DNA helicase IV -
  N5860_RS14615 (N5860_14600) - 3024865..3025311 (+) 447 WP_149335617.1 YccF domain-containing protein -
  N5860_RS14620 (N5860_14605) yccS 3025330..3027483 (+) 2154 WP_003831997.1 YccS family putative transporter -
  N5860_RS14625 (N5860_14610) sxy/tfoX 3027461..3028075 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  N5860_RS14630 (N5860_14615) sulA 3028293..3028802 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  N5860_RS14635 (N5860_14620) ompA 3029160..3030218 (+) 1059 WP_149335618.1 porin OmpA -
  N5860_RS14640 (N5860_14625) matP 3030308..3030760 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  N5860_RS14645 (N5860_14630) - 3030946..3032706 (+) 1761 WP_063940604.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=733548 N5860_RS14625 WP_003831996.1 3027461..3028075(-) (sxy/tfoX) [Citrobacter portucalensis strain AHM21C2861I]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=733548 N5860_RS14625 WP_003831996.1 3027461..3028075(-) (sxy/tfoX) [Citrobacter portucalensis strain AHM21C2861I]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676