Detailed information NTG0733536

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P6O79_RS10380
• Genome accession: NZ_CP120633
• Coordinates: 2037561..2038553 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain USVAST219
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2032561..2043553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P6O79_RS10360 (P6O79_10360)	ygbM	2033199..2033975 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
P6O79_RS10365 (P6O79_10365)	ygbN	2034064..2035428 (+)	1365	WP_000104433.1	GntP family transporter	-
P6O79_RS10370 (P6O79_10370)	-	2035571..2036614 (-)	1044	WP_277715622.1	MBL fold metallo-hydrolase	-
P6O79_RS10375 (P6O79_10375)	-	2036839..2037390 (+)	552	WP_001179444.1	flavodoxin family protein	-
P6O79_RS10380 (P6O79_10380)	rpoS	2037561..2038553 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P6O79_RS10385 (P6O79_10385)	nlpD	2038616..2039710 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
P6O79_RS10390 (P6O79_10390)	pcm	2039895..2040521 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P6O79_RS10395 (P6O79_10395)	surE	2040515..2041276 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P6O79_RS10400 (P6O79_10400)	truD	2041257..2042306 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
P6O79_RS10405 (P6O79_10405)	ispF	2042303..2042782 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P6O79_RS10410 (P6O79_10410)	ispD	2042782..2043492 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=733536 P6O79_RS10380 WP_000081550.1 2037561..2038553(-) (rpoS) [Escherichia coli strain USVAST219]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=733536 P6O79_RS10380 WP_000081550.1 2037561..2038553(-) (rpoS) [Escherichia coli strain USVAST219]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715