Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   N8E87_RS04275 Genome accession   NZ_CP104917
Coordinates   880766..883225 (+) Length   819 a.a.
NCBI ID   WP_404800581.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875766..888225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS04255 (N8E87_04255) - 876767..877987 (-) 1221 WP_264246236.1 NRAMP family divalent metal transporter -
  N8E87_RS04260 (N8E87_04260) thiE 877988..878650 (-) 663 WP_264246237.1 thiamine phosphate synthase -
  N8E87_RS04265 (N8E87_04265) thiD 878643..879461 (-) 819 WP_264246239.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  N8E87_RS04270 (N8E87_04270) thiM 879473..880276 (-) 804 WP_264246240.1 hydroxyethylthiazole kinase -
  N8E87_RS04275 (N8E87_04275) rec2 880766..883225 (+) 2460 WP_404800581.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N8E87_RS04280 (N8E87_04280) msbA 883444..885192 (+) 1749 WP_035685742.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  N8E87_RS04285 (N8E87_04285) lpxK 885208..886218 (+) 1011 WP_264246242.1 tetraacyldisaccharide 4'-kinase -
  N8E87_RS04290 (N8E87_04290) - 886393..886575 (+) 183 WP_035685738.1 Trm112 family protein -
  N8E87_RS04295 (N8E87_04295) kdsB 886572..887354 (+) 783 WP_264246244.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92398.82 Da        Isoelectric Point: 9.7228

>NTDB_id=733502 N8E87_RS04275 WP_404800581.1 880766..883225(+) (rec2) [Avibacterium paragallinarum strain AP-2]
MGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGIAVVGCGVDYWIKRQGLAKFFAYGAIFVLCLADFHYQAQQIL
QQAHAVEGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEGGF
DRQKWYFSKGVTAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLIAI
SGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQYF
QRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKLILRWCVALLHLQLGLL
LVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGTFSSWQGANELAEKITIFLSNWQHKWIDLSQTQSQ
WIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFIQDRTLAKWKWRLNPDKIPSPLCLKKLGIVLCVIFLINSGNLLIKH
FRQPDWRLETLDVGQGLATLLVKNQRGILYDTGAAWRGGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLRAY
PNATLITSSEKIERKTHRTFCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFIYK
AGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQIRLSFSANKPPPE
NISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=733502 N8E87_RS04275 WP_404800581.1 880766..883225(+) (rec2) [Avibacterium paragallinarum strain AP-2]
ATTGGCTTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTGCCGCAATCTTTTTT
GCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTGCGGTGGTGGGCTGTGGTGTTGACTATTGGATTAAGCGTCAAG
GACTAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAGATCTTA
CAGCAGGCTCACGCCGTTGAGGGGCTTGAAAAACGCATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCAGCAAGA
TTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAAGGGCGG
AAAAAGTGGCAGTCGGACAGCGTTGGCGAGCGGAATTATCCTTACGTCCATTATCTAGTCGGCTAAATGAGGGGGGATTT
GATCGGCAAAAATGGTATTTTTCAAAGGGGGTTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGAGGATTT
TTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGGCGTTAG
GGTTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATTTACCAAAAAACCAATACCGCTCATCTTATCGCTATT
TCAGGATTGCATATTGGCTTGGCGATGTTGCTCGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGACCTATTG
GATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTATTCCCA
CCCTGCGGGCGTTGGTAGCATTGGGGCTGGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAATATTTT
CAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTAGGGGCGGT
AGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTCAGGCAGGATCGCC
CGTTCTCTTTAGGGGCAATAATCGGTAAGCTCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGCTTATTG
TTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGCTGTACC
GTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCACATTTTCTTCTTGGCAAGGAGCAA
ATGAATTGGCAGAAAAGATCACCATTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAATCGCAA
TGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAAGTACAGAAAAATCACTCGCTGAA
TAGGCAAAAATCTATTCCGTTCATTCAGGATCGTACTTTGGCAAAATGGAAATGGAGGCTAAACCCTGACAAAATCCCCT
CGCCCTTATGCTTAAAAAAGCTAGGCATTGTGCTATGTGTTATTTTTCTCATCAATAGTGGAAACTTGCTAATAAAGCAT
TTTCGGCAACCCGATTGGCGGCTTGAAACCCTAGATGTAGGGCAGGGCTTGGCAACATTATTGGTAAAAAATCAGCGTGG
CATTTTATATGATACGGGCGCAGCCTGGCGTGGGGGAAGTATGGCAGAGCTAGAAATTTTGCCTTATTTACGGCGGCAGG
GCATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGAGCTGAAGCGGTGTTGCGGGCTTAT
CCCAATGCGACGCTTATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTTTTGTTTCGCGGGAACGCAATG
GCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTTGTGAAACGAGCGGAAAATAATGATTCGTGCGTGC
TGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCTCAGTTTATTTACAAG
GCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAACTTTGCA
ACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTTTGCAAG
CACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCGCCTTTCTTTTTCAGCCAATAAGCCACCGCCTGAA
AATATCAGCATTGACACCGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(572-754)

Competence protein (Competence)

(213-495)

Domain of unknown function (DUF4131) (DUF4131)

(31-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.941

93.407

0.495