Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   N8E86_RS05530 Genome accession   NZ_CP104914
Coordinates   1145164..1147623 (+) Length   819 a.a.
NCBI ID   WP_404833779.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140164..1152623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS05510 (N8E86_05510) - 1141165..1142385 (-) 1221 WP_264256958.1 NRAMP family divalent metal transporter -
  N8E86_RS05515 (N8E86_05515) thiE 1142386..1143048 (-) 663 WP_264256959.1 thiamine phosphate synthase -
  N8E86_RS05520 (N8E86_05520) thiD 1143041..1143859 (-) 819 WP_264256960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  N8E86_RS05525 (N8E86_05525) thiM 1143871..1144674 (-) 804 WP_035685744.1 hydroxyethylthiazole kinase -
  N8E86_RS05530 (N8E86_05530) rec2 1145164..1147623 (+) 2460 WP_404833779.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N8E86_RS05535 (N8E86_05535) msbA 1147842..1149590 (+) 1749 WP_264256961.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  N8E86_RS05540 (N8E86_05540) lpxK 1149606..1150616 (+) 1011 WP_264256962.1 tetraacyldisaccharide 4'-kinase -
  N8E86_RS05545 (N8E86_05545) - 1150791..1150973 (+) 183 WP_035685738.1 Trm112 family protein -
  N8E86_RS05550 (N8E86_05550) kdsB 1150970..1151752 (+) 783 WP_264256963.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92265.61 Da        Isoelectric Point: 9.7408

>NTDB_id=733477 N8E86_RS05530 WP_404833779.1 1145164..1147623(+) (rec2) [Avibacterium paragallinarum strain AG21-0333]
MGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGIAVVGCGVAYWVKHQGIAKFFAYGAIFVLCLADFHYQAQQLL
QQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEGGF
DRQKWYFSKGITAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLIAI
SGLHIGLAMLLGVGIARGIQFCLPTHWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQYF
QRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKRILRWCVALLHLQLGLL
LVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGTFSSWQGANELAEKITVFLSNWQHKWIDLSQTQSQ
WIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFIQDRTLVKWKWRLNPDKIPSVLCLKKLGVVLVLIFLVNGGNLLVTH
FRQPDWRLETLDVGQGLATLIVKEQRGILYDTGAAWQNGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLRAY
PNATLITSSEKIERKTHRTFCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFIYK
AGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQIRLSFSANKPPPE
NISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=733477 N8E86_RS05530 WP_404833779.1 1145164..1147623(+) (rec2) [Avibacterium paragallinarum strain AG21-0333]
ATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTGCCGCAATCTTTTTT
GCTTGAGCCAAAGCAAAGTGCGTGGTTGGCGGGGATTGCGGTGGTGGGCTGTGGCGTTGCCTATTGGGTTAAGCATCAAG
GGATAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAGCTCTTA
CAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGCATTGAGCGGGAAATTCGCATTGTCGAAGTACTACACCAGCAAGA
TTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAAGGGCGG
AAAAAGTGGCAGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGGGGATTT
GATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGAAGATTT
TTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGGCGTTAG
GGTTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATCGCTATT
TCAGGGCTACATATTGGCTTGGCAATGTTGCTCGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGACTCATTG
GATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTATTCCCA
CCCTGCGGGCGTTGGTGGCATTGGGACTGGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAATATTTT
CAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTGGGAGCAGT
GGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTTAGGCAGGATCGCC
CGTTCTCTTTAGGGGCAATAATCGGTAAGCGCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGCTTATTG
TTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGCTGTACC
GTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCACATTTTCTTCTTGGCAAGGAGCAA
ATGAATTGGCAGAAAAGATCACCGTTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAATCGCAA
TGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAGGTACAGAAAAATCACTCGCTGAA
TAGGCAAAAATCCATTCCGTTCATTCAGGATCGCACTTTGGTAAAATGGAAATGGAGGTTAAACCCTGACAAAATCCCCT
CAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCGGAAATTTGTTGGTAACCCAT
TTTCGGCAACCCGATTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTTAAAGAGCAGCGGGG
GATTTTGTACGATACGGGGGCGGCTTGGCAAAATGGCAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGCGGCAGG
GCATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGGGCTTAT
CCCAATGCGACGCTCATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTTTTGTTTCGCGGGAACGCAATG
GCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGTGCGTGC
TGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAGATTGAACCACAGTTTATTTACAAG
GCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAACCTTGCA
ACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTTTGCAAG
CACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCGCCTTTCTTTTTCAGCCAATAAGCCACCGCCTGAA
AATATCAGCATTGACACCGCTCGAGGCACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-495)

Metallo-beta-lactamase superfamily (Lactamase_B)

(572-754)

Domain of unknown function (DUF4131) (DUF4131)

(33-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.941

93.407

0.495