Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P5647_RS06095 Genome accession   NZ_CP120622
Coordinates   1180549..1182408 (+) Length   619 a.a.
NCBI ID   WP_252360566.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 1090     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175549..1187408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS06060 (P5647_06060) yjbC 1176250..1176828 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  P5647_RS06065 (P5647_06065) spx 1177009..1177404 (+) 396 WP_003245483.1 transcriptional regulator Spx -
  P5647_RS06070 (P5647_06070) yjbE 1177447..1178103 (-) 657 WP_003232944.1 TerC family protein -
  P5647_RS06075 (P5647_06075) - 1178273..1178413 (+) 141 WP_119122854.1 hypothetical protein -
  P5647_RS06080 (P5647_06080) mecA 1178380..1179036 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  P5647_RS06085 (P5647_06085) - 1179031..1179153 (-) 123 WP_003245684.1 hypothetical protein -
  P5647_RS06090 (P5647_06090) coiA 1179197..1180348 (+) 1152 WP_003245839.1 competence protein CoiA Machinery gene
  P5647_RS06095 (P5647_06095) pepF 1180549..1182408 (+) 1860 WP_252360566.1 oligoendopeptidase F Regulator
  P5647_RS06100 (P5647_06100) - 1182446..1182613 (-) 168 WP_003244944.1 hypothetical protein -
  P5647_RS06105 (P5647_06105) spxH 1182927..1183826 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  P5647_RS06110 (P5647_06110) bhbI 1183823..1184221 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  P5647_RS06115 (P5647_06115) cwlQ 1184476..1185210 (-) 735 WP_003245645.1 bifunctional muramidase/murein lytic transglycosylase -
  P5647_RS06120 (P5647_06120) yjbK 1185225..1185797 (-) 573 WP_003232924.1 CYTH domain-containing protein -
  P5647_RS06125 (P5647_06125) - 1185922..1186290 (+) 369 WP_003232922.1 hypothetical protein -
  P5647_RS06130 (P5647_06130) yjbM 1186319..1186954 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 71349.47 Da        Isoelectric Point: 5.7705

>NTDB_id=733414 P5647_RS06095 WP_252360566.1 1180549..1182408(+) (pepF) [Bacillus subtilis strain DSM 1090]
MNQRRRGGSPWLRKKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQD
KVMERLGRLYTYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEIT
KERPHVLSEKEEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTY
GQYKNTMATTLSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDL
YTPLVKDAGMKVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNL
FTLVHEFGHSVHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAE
FEHLIHTKAQEGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGK
PAVDRYIDFLKAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=733414 P5647_RS06095 WP_252360566.1 1180549..1182408(+) (pepF) [Bacillus subtilis strain DSM 1090]
TTGAATCAAAGAAGACGAGGGGGATCACCATGGCTGAGGAAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAA
GGCAGAAGACACATGGAGACTTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAAT
TAATTCCGAATTTATCTAAGTATAAAGGAAAGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGAT
AAAGTGATGGAGCGGCTAGGTAGGCTGTACACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCA
GGGGCTGAATGACAAGGCGGGAAACCTGTATACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCA
TAGAAGAAGACAAACTGCAGCAGTTCATTCTTGAAAAAGAAGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACA
AAGGAACGTCCGCATGTGCTGAGCGAGAAGGAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAA
TACATTCAGCGTGTTAAATAACGCAGATATAACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTC
ACGGCAACTTTATTAATTTCTTGGAAAGTGAAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTAC
GGACAATATAAAAACACAATGGCCACGACGCTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTA
CAAGTCCGCGCGTGAGGCTGCGCTTTCTAACAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATA
AGCATTTGCCGCTCCTGCACCGCTATATTGCGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTG
TATACACCGCTTGTGAAAGATGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACC
TTTAGGGGAAGAATATGCCTCTATCCTAAAAGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAAC
GCAATGGGGCTTATTCATCAGGAGCTTACGGCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTC
TTTACGCTCGTGCACGAGTTTGGACATTCCGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTA
CAGCATCTTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATG
AAAAACAGCGCTTATATATTCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAA
TTTGAACATCTGATTCATACAAAGGCGCAAGAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCT
GAATAAAAAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATT
ACAATTACTATGTGTATCAGTATGCGACAGGTTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAG
CCGGCGGTTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGT
TGATATGACGTCTCCAGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGA
TGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(130-199)

Peptidase family M3 (Peptidase_M3)

(221-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

95.961

0.469