Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   N7297_RS00785 Genome accession   NZ_CP104908
Coordinates   146566..147039 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain YZM-0314     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141566..152039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7297_RS00770 (N7297_00770) pilX 144195..145013 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N7297_RS00775 (N7297_00775) pilW 145010..146011 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  N7297_RS00780 (N7297_00780) pilV 146012..146572 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  N7297_RS00785 (N7297_00785) fimU 146566..147039 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N7297_RS00790 (N7297_00790) ispH 147209..148159 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N7297_RS00795 (N7297_00795) gmk 148282..148911 (+) 630 WP_000015937.1 guanylate kinase -
  N7297_RS00800 (N7297_00800) rpoZ 148984..149262 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N7297_RS00805 (N7297_00805) - 149301..149430 (+) 130 Protein_156 hypothetical protein -
  N7297_RS00810 (N7297_00810) - 149470..151575 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=733341 N7297_RS00785 WP_001214061.1 146566..147039(-) (fimU) [Acinetobacter baumannii strain YZM-0314]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=733341 N7297_RS00785 WP_001214061.1 146566..147039(-) (fimU) [Acinetobacter baumannii strain YZM-0314]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987