Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N8A97_RS29210 Genome accession   NZ_CP104901
Coordinates   6052164..6052721 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6047164..6057721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A97_RS29190 (N8A97_29185) pilR 6048440..6049777 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  N8A97_RS29195 (N8A97_29190) thiO 6049823..6050917 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  N8A97_RS29200 (N8A97_29195) - 6051052..6051561 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  N8A97_RS29205 (N8A97_29200) - 6051667..6052173 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  N8A97_RS29210 (N8A97_29205) pilV 6052164..6052721 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  N8A97_RS29215 (N8A97_29210) pilW 6052718..6053542 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  N8A97_RS29220 (N8A97_29215) pilX 6053539..6054126 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  N8A97_RS29225 (N8A97_29220) pilY1 6054138..6057629 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=733277 N8A97_RS29210 WP_003119423.1 6052164..6052721(+) (pilV) [Pseudomonas aeruginosa strain DB-1]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=733277 N8A97_RS29210 WP_003119423.1 6052164..6052721(+) (pilV) [Pseudomonas aeruginosa strain DB-1]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995