Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   P5657_RS08195 Genome accession   NZ_CP120621
Coordinates   1593531..1594391 (+) Length   286 a.a.
NCBI ID   WP_032677058.1    Uniprot ID   C0JBN8
Organism   Bacillus subtilis strain DSM 13019     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588531..1599391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS08165 (P5657_08165) pncA 1588995..1589546 (+) 552 WP_014477836.1 isochorismatase family cysteine hydrolase -
  P5657_RS08170 (P5657_08170) pncB 1589562..1591034 (+) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  P5657_RS08175 (P5657_08175) pdeH 1591171..1592400 (+) 1230 WP_277710388.1 cyclic di-GMP phosphodiesterase -
  P5657_RS08180 (P5657_08180) - 1592376..1592744 (-) 369 WP_038828672.1 hypothetical protein -
  P5657_RS08185 (P5657_08185) - 1592859..1592984 (-) 126 WP_120028613.1 hypothetical protein -
  P5657_RS08190 (P5657_08190) degQ 1593206..1593346 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  P5657_RS08195 (P5657_08195) comQ 1593531..1594391 (+) 861 WP_032677058.1 polyprenyl synthetase family protein Regulator
  P5657_RS08200 (P5657_08200) comX 1594406..1594567 (+) 162 WP_049140565.1 competence pheromone ComX -
  P5657_RS08205 (P5657_08205) comP 1594575..1596872 (+) 2298 WP_212082410.1 histidine kinase Regulator
  P5657_RS08210 (P5657_08210) comA 1596953..1597597 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  P5657_RS08215 (P5657_08215) yuxO 1597616..1597996 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  P5657_RS08220 (P5657_08220) mnhG 1598037..1598411 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  P5657_RS08225 (P5657_08225) mrpF 1598395..1598679 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  P5657_RS08230 (P5657_08230) mrpE 1598679..1599155 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32483.40 Da        Isoelectric Point: 4.6790

>NTDB_id=733264 P5657_RS08195 WP_032677058.1 1593531..1594391(+) (comQ) [Bacillus subtilis strain DSM 13019]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFSQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIISQIDNDYKGLFYLNNDFVQKKNTLAYLYLKKQFNDASAELLSLYQKPEEFVSINTKALK
RKLTEAGVIQYLLVMKHLSLQKIKNEMSQLKLEEDKTEKLLSVMIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=733264 P5657_RS08195 WP_032677058.1 1593531..1594391(+) (comQ) [Bacillus subtilis strain DSM 13019]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTTCACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCAC
CGCAAACGGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGCTGGCAACAGGCAAATACCATCCCATTGTAGCTTCATATTCTTATGAACTTGGGATTATTTCACAGATCGATAATGA
TTATAAAGGTTTGTTTTACTTAAATAACGATTTTGTTCAGAAAAAAAATACATTGGCATACTTATACTTAAAGAAACAAT
TTAACGATGCTTCAGCGGAGCTACTAAGTTTATATCAAAAACCAGAGGAATTTGTTTCTATTAATACTAAGGCTTTGAAG
CGAAAATTGACAGAAGCAGGCGTTATACAATATTTACTGGTGATGAAACATTTATCTCTCCAAAAAATAAAAAATGAAAT
GTCACAATTAAAACTAGAAGAAGATAAAACTGAAAAATTATTGTCTGTTATGATTAAATAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(39-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0JBN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

44.84

98.252

0.441