Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SAP2_RS11495 Genome accession   NZ_AP019698
Coordinates   2381097..2382464 (-) Length   455 a.a.
NCBI ID   WP_142019891.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain P2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2376097..2387464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAP2_RS11480 (SAP2_23030) cysE 2377185..2377835 (-) 651 WP_002509406.1 serine O-acetyltransferase -
  SAP2_RS11485 (SAP2_23040) gltX 2378136..2379593 (-) 1458 WP_002509405.1 glutamate--tRNA ligase -
  SAP2_RS11490 (SAP2_23050) - 2379971..2381032 (-) 1062 WP_142019889.1 PIN/TRAM domain-containing protein -
  SAP2_RS11495 (SAP2_23060) radA 2381097..2382464 (-) 1368 WP_142019891.1 DNA repair protein RadA Machinery gene
  SAP2_RS11500 (SAP2_23070) - 2382954..2385425 (-) 2472 WP_142019893.1 ATP-dependent Clp protease ATP-binding subunit -
  SAP2_RS11505 (SAP2_23080) - 2385439..2386449 (-) 1011 WP_142019895.1 protein arginine kinase -
  SAP2_RS11510 (SAP2_23090) - 2386442..2386999 (-) 558 WP_142019897.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50019.36 Da        Isoelectric Point: 6.5901

>NTDB_id=73326 SAP2_RS11495 WP_142019891.1 2381097..2382464(-) (radA) [Staphylococcus arlettae strain P2]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEESIEQQASSPKHGVRSKDTASKVQKLNEVNNETAPRIESKSTEFNR
VLGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQSYNVLYITGEESLNQTKLRAERLDEDSSQLNVFAETDLEIIHETV
KKMQPDLIVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKVAGGVRLTEPAVDLGIIMATASSFKDLAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVVIPETNIGGWTFPDNIQVIGVSSVHDALKYALKQ

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=73326 SAP2_RS11495 WP_142019891.1 2381097..2382464(-) (radA) [Staphylococcus arlettae strain P2]
TTGGCCAAAAAGAAAGTGATATTTGAATGTTTGGCATGTGGGTATCAGTCTCCGAAATGGATGGGGAAATGTCCAAATTG
TGGTGCGTGGAACCAAATGGAAGAGAGTATAGAGCAACAAGCCTCAAGCCCAAAACATGGCGTGAGAAGTAAGGATACTG
CATCAAAAGTTCAGAAATTGAATGAAGTTAATAATGAAACGGCACCTAGAATAGAAAGTAAATCAACAGAGTTTAACAGA
GTATTGGGTGGTGGCATAGTCAGTGGTTCGTTAGTACTTATTGGTGGTGATCCCGGAATTGGGAAATCAACGCTATTGTT
ACAAATATGTGCAGCGTTATCACAAAGCTATAATGTACTTTATATTACGGGGGAAGAATCATTAAATCAAACTAAGCTAA
GAGCTGAACGTTTAGATGAAGATTCGAGTCAATTAAATGTATTTGCTGAAACGGATTTAGAGATTATTCATGAGACTGTG
AAAAAAATGCAACCTGATTTGATTGTAGTAGACTCGATTCAAACGATATTCCACCCTGAAATTAGTTCGGCACCTGGCTC
TGTGTCACAAGTAAGAGAAAGTACGCAAAGTTTGATGAATATTGCTAAACAAATGAATATTGCGACCTTTATTGTAGGGC
ATGTAACTAAAGAAGGCCAAATTGCTGGACCGCGATTATTGGAACATATGGTAGATACAGTGTTGTATTTTGAAGGTGAT
GAACATCATGCCTATCGTATTTTACGTGCGGTCAAAAACCGTTTTGGTTCAACCAATGAAATGGGAATTTTTGAAATGAA
ACAAAGCGGACTAAAAGGTGTCAAAAACCCTTCAGAGATGTTTTTAGAAGAGCGTTCGACGAATGTGCCAGGTTCAACTA
TTGTATCAACGATGGAAGGGACAAGACCACTATTGATTGAAGTACAAGCATTAGTTACACCAACGACCTTTAATAACCCG
AGACGTATGGCGACAGGTATTGATCATAATAGGCTTAGTTTATTGATGGCAGTGTTAGAGAAAAAAGAGAATTTTTTATT
ACAACAACAAGATGCATATATTAAAGTTGCTGGTGGTGTACGTCTAACAGAACCTGCTGTTGACTTAGGAATTATAATGG
CTACGGCTTCTAGTTTTAAAGATTTAGCTGTTGATGGTCTCGATTGTTTCATCGGAGAAGTTGGACTTACTGGTGAAGTA
CGTCGTGTATCCAGAATCGAACAACGTGTACAAGAAGCTGCAAAGCTTGGTTTTAAAAGGGTTGTTATCCCTGAAACAAA
TATTGGAGGCTGGACTTTCCCTGATAATATTCAAGTTATCGGTGTTTCTAGCGTTCATGATGCATTAAAATATGCATTGA
AACAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.474

100

0.646
  radA Streptococcus pneumoniae Rx1

59.556

98.901

0.589
  radA Streptococcus pneumoniae D39

59.556

98.901

0.589
  radA Streptococcus pneumoniae R6

59.556

98.901

0.589
  radA Streptococcus pneumoniae TIGR4

59.556

98.901

0.589
  radA Streptococcus mitis NCTC 12261

59.556

98.901

0.589
  radA Streptococcus mitis SK321

59.556

98.901

0.589

Multiple sequence alignment