Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P5649_RS21360 Genome accession   NZ_CP120613
Coordinates   4078122..4078865 (-) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain DSM 23521     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4073122..4083865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS21340 (P5649_21340) - 4073501..4074892 (+) 1392 WP_003233218.1 hypothetical protein -
  P5649_RS21345 (P5649_21345) sndC 4074965..4076155 (+) 1191 WP_003245681.1 N-acetyl amino acid acetylase SndC -
  P5649_RS21350 (P5649_21350) ecsC 4076173..4076883 (-) 711 WP_003233225.1 EcsC family protein -
  P5649_RS21355 (P5649_21355) ecsB 4076903..4078129 (-) 1227 WP_003245169.1 ABC transporter permease EcsB -
  P5649_RS21360 (P5649_21360) pptA 4078122..4078865 (-) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  P5649_RS21365 (P5649_21365) hinT 4079353..4079790 (+) 438 WP_003233231.1 HIT family protein -
  P5649_RS21370 (P5649_21370) serC 4079937..4081016 (+) 1080 WP_003233234.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  P5649_RS21375 (P5649_21375) trpP 4081141..4081659 (+) 519 WP_003233236.1 tryptophan transporter TrpP -
  P5649_RS21380 (P5649_21380) - 4081733..4081924 (-) 192 WP_003233238.1 hypothetical protein -
  P5649_RS21385 (P5649_21385) yhaH 4082054..4082410 (+) 357 WP_003245875.1 YtxH domain-containing protein -
  P5649_RS21390 (P5649_21390) scoC 4082587..4083198 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  P5649_RS21395 (P5649_21395) yhaI 4083195..4083536 (-) 342 WP_009966921.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=733207 P5649_RS21360 WP_003233230.1 4078122..4078865(-) (pptA) [Bacillus subtilis strain DSM 23521]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=733207 P5649_RS21360 WP_003233230.1 4078122..4078865(-) (pptA) [Bacillus subtilis strain DSM 23521]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547