Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N7761_RS05880 Genome accession   NZ_CP104882
Coordinates   1155543..1155995 (-) Length   150 a.a.
NCBI ID   WP_005586498.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150543..1160995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS05850 (N7761_05850) - 1151062..1151334 (-) 273 WP_005547552.1 GNAT family N-acetyltransferase -
  N7761_RS05855 (N7761_05855) yacG 1151334..1151546 (-) 213 WP_005567966.1 DNA gyrase inhibitor YacG -
  N7761_RS05860 (N7761_05860) coaE 1151536..1152159 (-) 624 WP_005547548.1 dephospho-CoA kinase -
  N7761_RS05865 (N7761_05865) - 1152209..1152898 (-) 690 WP_005547547.1 A24 family peptidase -
  N7761_RS05870 (N7761_05870) pilC 1152895..1154118 (-) 1224 WP_005567968.1 type II secretion system F family protein Machinery gene
  N7761_RS05875 (N7761_05875) - 1154111..1155516 (-) 1406 Protein_1132 GspE/PulE family protein -
  N7761_RS05880 (N7761_05880) pilA 1155543..1155995 (-) 453 WP_005586498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  N7761_RS05885 (N7761_05885) ampD 1156117..1156671 (+) 555 WP_005567973.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  N7761_RS05890 (N7761_05890) nanQ 1157145..1157615 (-) 471 WP_005547536.1 N-acetylneuraminate anomerase -
  N7761_RS05895 (N7761_05895) pnp 1157909..1160038 (+) 2130 WP_032997542.1 polyribonucleotide nucleotidyltransferase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15547.96 Da        Isoelectric Point: 9.1384

>NTDB_id=733191 N7761_RS05880 WP_005586498.1 1155543..1155995(-) (pilA) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS

Nucleotide


Download         Length: 453 bp        

>NTDB_id=733191 N7761_RS05880 WP_005586498.1 1155543..1155995(-) (pilA) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.319

92

0.573
  pilA Haemophilus influenzae Rd KW20

59.028

96

0.567
  pilA Glaesserella parasuis strain SC1401

53.846

95.333

0.513